Factsheet for GSMUA_Achr9P16270_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	67.88	78.13
GSMUA_Achr6P14860_001	Banana	nucleus	57.25	67.95
Bra011388.1-P	Field mustard	nucleus	35.5	67.94
PGSC0003DMT400075574	Potato	nucleus	51.12	67.49
Solyc12g095890.1.1	Tomato	nucleus	50.12	66.06
OQU76574	Sorghum	nucleus	55.0	63.31
Zm00001d036977_P001	Maize	nucleus	54.75	62.39
Os02t0227400-01	Rice	extracellular	47.12	61.8
TraesCS7D01G365600.4	Wheat	nucleus	55.5	61.16
HORVU7Hr1G088370.13	Barley	nucleus	55.5	61.16
TraesCS7B01G270600.4	Wheat	nucleus	55.25	60.97
TraesCS7A01G357100.1	Wheat	nucleus	55.38	60.68
CDX68897	Canola	nucleus	53.62	59.17
CDX75292	Canola	nucleus	53.88	59.12
VIT_11s0016g03040.t01	Wine grape	nucleus	44.12	59.03
KRH62113	Soybean	nucleus	52.75	57.97
KRH52804	Soybean	nucleus	53.0	57.92
Zm00001d053559_P007	Maize	mitochondrion	48.88	57.08
CDX77017	Canola	nucleus	53.25	56.72
AT4G32850.8	Thale cress	nucleus	53.25	55.69
CDY35331	Canola	nucleus	53.0	55.64
KXG29853	Sorghum	mitochondrion	48.38	55.44
Solyc08g066200.2.1	Tomato	nucleus	54.38	55.27
Bra034276.1-P	Field mustard	cytosol	53.0	54.99
HORVU6Hr1G040920.3	Barley	mitochondrion, nucleus	46.62	54.61
Zm00001d046255_P035	Maize	nucleus	55.88	54.18
TraesCS6D01G174400.1	Wheat	cytosol, mitochondrion	46.88	53.49
AT2G25850.2	Thale cress	nucleus	53.0	53.0
TraesCS6A01G191200.1	Wheat	cytosol, mitochondrion	45.75	52.44
TraesCS6B01G219800.3	Wheat	cytosol, mitochondrion	45.5	51.93
GSMUA_AchrUn_...	Banana	nucleus	46.12	49.66
GSMUA_Achr8P29920_001	Banana	cytosol, golgi, plastid	22.75	32.67

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016779	GO:GO:0031123	GO:GO:0043631
EnsemblPlantsGene:GSMUA_Achr9G16270_001	EnsemblPlants:GSMUA_Achr9P16270_001	EnsemblPlants:GSMUA_Achr9T16270_001	UniProt:M0U0T4	InterPro:NuclTrfase_I-like_C	PFAM:PF01909
PFAM:PF04926	PFAM:PF04928	PANTHER:PTHR10682	PANTHER:PTHR10682:SF29	InterPro:PolA_pol_RNA-bd_dom	InterPro:PolA_pol_cen_dom
InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631	TMHMM:TMhelix
UniParc:UPI00029536B4	:	:	:	:	:

Description

Putative poly(A) polymerase [Source:GMGC_GENE;Acc:GSMUA_Achr9G16270_001]

Coordinates

chr9:-:10958208..10968516

Molecular Weight (calculated)

90573.6 Da

IEP (calculated)

6.365

GRAVY (calculated)

-0.386

Length

800 amino acids

Sequence
(BLAST)

001: MNSSDKMVRK PPPAPRQYGL TKPISTAGPT AADLKRTIEL EKFLLDAGLY ESKEEAIKRE EVLGEINEIV KSWVKQLTRQ RGYSDQMVEE ANAVIFTFGS
101: YRLGVHGPGS DIDTLCVGPS YVNREEDFFI VLHDILAEME EVSELQPVPD AHVPVMRFKF HGISIDLLYA SISQLVVPED LDISHGSVLY DVDEATVRSL
201: NGCRVADQIL LLVPKIENFR TTLRCLKFWA KKRGVYSNVT GFLGGVNWAL LVARVCQLYP NAVPSMLVSR FFRVYTQWRW PNPVMLCATE EDELGLPVWD
301: PRKNPRDRTH HMPIITPAYP CMNSSYNVST STLRVMMEQF QIGNMTCEDI ELNKAGWSAL FESYLFFETY RNYLQIDIVA ADSEDLRLWK GWVESRLRQL
401: TLKIERDTYG MLQCHPYPNE YVDHSRQWSH CAFFMGLQRK QGVKIQEGQQ FDIRGTVDEF RHEVNMYMFW KPRMEIYVSH VRRKQLPSYV FPVGHKRPRP
501: SRPIGQQLID KTSGEDSCDE CQGGPSVLPR KRRMNADYLD DRANKHEKQA SINSSWEKFP NSDQHNHVDV DENWSKRKKD EPHEVVFKQV SYGSVCLSWQ
601: LQAFASNIDN ISERIPNDIV CFKAHSLENL AVVGSSGVDD GTEGPFGDDQ DGNGAKLVNG ISHFGSGKAS AGKLFCNSET FEAVVMQQLA GSDSTSLDDG
701: KDLLHYGRQG ANVEMDNLNG SARDGVGDTL KPNFAFGVAL QKAHGVTANA AQKPSLRHAS MNPIFYFVIT NAVFSLCYSA CCIVFPSLWQ SQSNFEGMKF

Best Arabidopsis Sequence Match ( AT4G32850.1 )
(BLAST)

001: MMVGTQNLGG SLPPLNSPKS YGITKPLSLA GPSSADIKRN VELEKYLVDE GLYESKDDTM RREEVLGRID QIVKHWVKQL TQQRGYTDQM VEDANAVIFT
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQSNSLVSGM EKSEDRARSE SFQKSQIRLL T

Arabidopsis Description

nPAPnuclear poly(a) polymerase [Source:TAIR;Acc:AT4G32850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.