Factsheet for Zm00001d053559_P007

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG29853	Sorghum	mitochondrion	93.43	91.69
Os02t0227400-01	Rice	extracellular	67.59	75.9
HORVU6Hr1G040920.3	Barley	mitochondrion, nucleus	71.68	71.89
TraesCS6D01G174400.1	Wheat	cytosol, mitochondrion	73.14	71.47
TraesCS6A01G191200.1	Wheat	cytosol, mitochondrion	71.09	69.77
TraesCS6B01G219800.3	Wheat	cytosol, mitochondrion	70.8	69.19
Bra011388.1-P	Field mustard	nucleus	39.42	64.59
PGSC0003DMT400075574	Potato	nucleus	55.18	62.38
Solyc12g095890.1.1	Tomato	nucleus	54.74	61.78
Zm00001d036977_P001	Maize	nucleus	62.34	60.83
GSMUA_Achr10P...	Banana	nucleus	59.85	58.99
Zm00001d044377_P001	Maize	cytosol	12.99	57.42
GSMUA_Achr6P14860_001	Banana	nucleus	56.06	56.97
Zm00001d031424_P001	Maize	cytosol	14.16	56.73
VIT_11s0016g03040.t01	Wine grape	nucleus	47.88	54.85
KRH62113	Soybean	nucleus	57.37	53.98
Zm00001d040140_P001	Maize	cytosol	14.16	53.59
KRH52804	Soybean	nucleus	57.08	53.42
CDX68897	Canola	nucleus	56.5	53.38
CDX75292	Canola	nucleus	56.64	53.22
Zm00001d016073_P001	Maize	cytosol	14.6	52.63
Zm00001d046255_P035	Maize	nucleus	62.19	51.64
CDX77017	Canola	nucleus	55.04	50.2
CDY35331	Canola	nucleus	55.33	49.74
Zm00001d002505_P001	Maize	nucleus	40.0	49.64
Solyc08g066200.2.1	Tomato	nucleus	56.93	49.56
AT4G32850.8	Thale cress	nucleus	55.33	49.54
Bra034276.1-P	Field mustard	cytosol	55.18	49.03
GSMUA_Achr9P16270_001	Banana	nucleus	57.08	48.88
AT2G25850.2	Thale cress	nucleus	55.04	47.12
Zm00001d033448_P004	Maize	nucleus	43.5	40.0
Zm00001d013599_P016	Maize	nucleus	43.5	39.73
Zm00001d021105_P001	Maize	endoplasmic reticulum, plasma membrane	7.45	35.17
Zm00001d012429_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	7.45	32.08
Zm00001d047607_P001	Maize	cytosol, plasma membrane, plastid	22.63	30.51
Zm00001d028920_P004	Maize	cytosol, plasma membrane, plastid	23.5	29.81
Zm00001d022535_P004	Maize	endoplasmic reticulum, plasma membrane	22.63	28.92

Protein Annotations

Gene3D:1.10.1410.10	EntrezGene:100280371	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	UniProt:A0A1D6QQ32
ProteinID:AQK59650.1	ProteinID:AQK59654.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016740	GO:GO:0016779	GO:GO:0031123	GO:GO:0043631	GO:GO:0046872	InterPro:NuclTrfase_I-like_C
PFAM:PF01909	PFAM:PF04926	PFAM:PF04928	PIRSF:PIRSF018425	PANTHER:PTHR10682	PANTHER:PTHR10682:SF27
InterPro:PolA_pol_RNA-bd_dom	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301
SUPFAM:SSF81631	UniParc:UPI000842D9BA	EnsemblPlantsGene:Zm00001d053559	EnsemblPlants:Zm00001d053559_P007	EnsemblPlants:Zm00001d053559_T007	:

Description

Nuclear poly(A) polymerase 2

Coordinates

chr4:-:234082151..234089274

Molecular Weight (calculated)

76260.9 Da

IEP (calculated)

5.906

GRAVY (calculated)

-0.233

Length

685 amino acids

Sequence
(BLAST)

001: MAGSVGKARA ALRSSPKRYS GTDPPLSLAG PTLADLQRTA ELEKFLVEAG LYEGKEESAK REDVLSEIGL IVKEWVKQLT RKKGYAEQLV EQANAILFTF
101: GSYRLGVSAS LVHGPGADID TLCVGPSYVN REEDFFVTLH GILAEKEEVA ELQPVPDAHV PVLKFKFRGI SIDLLYASIS LSVIPADFDI SQGSVLCDVD
201: EATVRSLNGC RVADQILRLV PNVENFRTTL RCLKYWAKRR GVYSNITGFL GGVNWALLVA RVCQLYPNAV PSMLVSRFFR VFTQWQWPNP VMLCAIENND
301: LGFSIWDPRK NPRDRNHLMP IITPAYPCMN SSYNVSTSTL RVIMEQFQFG NKVCQEIELN KANWNALFEP FHFFEAYRKF LVVDIVAEDD DDLRLWKGWI
401: ESRLRQLTLK IERDTKGILQ CHPYPCEYSD PTIECAHCAF YMGLSRKEGL KKRGQQFDIR GTVDEFMREI GMYSLWKPGM DLAVTHVHRE QVPSYVFEQG
501: YKKPCPTMHA NQQEQSDGDG TFSPYLESQL KRKYISDGDG HVDLCKSVKR ASVSPPGVGT PPHLGNSVSN VVCDSPVKFV SSVVCSGAHA SSSHDDINIE
601: QAQLTTSPYG SEDTSASGTS CAAVGAVILA DESSKLGNLT SDLEVDTIQT MPLHTSLECV AQKGETKLEE IRRLASNNCA EFLES

Best Arabidopsis Sequence Match ( AT2G25850.1 )
(BLAST)

001: MVSTQQRTDD DSSQPVKASL KSYGITEPLS IAGPSAADVK RNLELEKFLV DEGLYESKEE TMRREEVVVR IDQIVKHWVK QLTRQRGYTD QMVEDANAVI
101: FTFGSYRLGV HGPMADIDTL CVGPSYVNRE EDFFIFFRDI LAEMEEVTEL QPVTDAHVPV MKFKFQGISI DLLYASISLL VIPQDLDISN SSVLCDVDEQ
201: TVRSLNGCRV ADQILKLVPN SEHFRTTLRC LKYWAKKRGV YSNVTGFLGG VNWALLVARL CQFYPNAIPS MLVSRFFRVY TQWRWPNPVM LCAIEEDDLS
301: FPVWDPRKNH RDRYHLMPII TPAYPCMNSS YNVSQSTLRV MTEQFQFGNT ICQEIELNKQ HWSSLFQQYM FFEAYKNYLQ VDVLAADAED LLAWKGWVES
401: RFRQLTLKIE RDTNGMLMCH PQPNEYVDTS KQFRHCAFFM GLQRADGFGG QECQQFDIRG TVDEFRQEVN MYMFWRPGMD VHVSHVRRRQ LPSFVFPNGY
501: KRSRQSRHQS QQCREPGDEG VGSLSDSVER YAKRKNDDEI MNSRPEKREK RASCSLHTLD AASPDSSGIT TSGTPQIGIV PGPRAECLVT GDLVCNVTSL
601: PNVEVEAEKF ISKITELRKF SQYEHTSGSE QILEVDSRAL VQSYHDLAEP VAKHVRPDLS ALLACEGGQN KEIGHDMGSE SINDTDTQHL PRRLNVNEDV
701: DEVEREAKLG EIAGGVLWNG HCGRNLDHEG FVTPANLDSA VENRNLHSDG LFKSGLPEEL QSNSLLSGTG KLDDGASSRR LSLKSVA

Arabidopsis Description

PAPS2PAPS2 [Source:UniProtKB/TrEMBL;Acc:A0A178VXR1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.