Factsheet for Zm00001d033448_P004

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031424_P001	Maize	cytosol	22.28	97.08
Zm00001d044377_P001	Maize	cytosol	19.87	95.48
Zm00001d040140_P001	Maize	cytosol	22.95	94.48
Zm00001d016073_P001	Maize	cytosol	23.49	92.11
EER93704	Sorghum	cytosol	92.48	91.87
Zm00001d013599_P016	Maize	nucleus	92.35	91.73
TraesCS4D01G067100.1	Wheat	nucleus	71.68	73.25
TraesCS4A01G246800.1	Wheat	nucleus	71.28	72.94
TraesCS4B01G068100.1	Wheat	nucleus	71.28	72.84
HORVU4Hr1G011370.8	Barley	nucleus	71.81	70.77
Os06t0319600-01	Rice	cytosol	12.21	70.54
CDY58017	Canola	cytosol, nucleus, plasma membrane	25.37	64.29
VIT_17s0000g03120.t01	Wine grape	cytosol, nucleus, plastid	49.53	56.68
GSMUA_AchrUn_...	Banana	nucleus	54.5	54.64
Solyc05g008630.2.1	Tomato	nucleus	47.92	52.35
CDY21725	Canola	nucleus	49.4	51.76
CDX81855	Canola	nucleus	49.26	51.69
CDX96740	Canola	nucleus	48.99	51.19
AT1G17980.1	Thale cress	nucleus	48.99	51.19
CDX83877	Canola	nucleus	48.72	50.98
CDY17685	Canola	nucleus	45.91	50.59
KRH39125	Soybean	nucleus	51.28	50.46
Bra016573.1-P	Field mustard	nucleus	46.85	50.43
Bra031010.1-P	Field mustard	nucleus	46.58	50.36
Bra024894.1-P	Field mustard	nucleus	45.37	50.3
KRH48590	Soybean	nucleus	50.6	49.8
CDX77811	Canola	nucleus	46.04	49.49
VIT_01s0011g04320.t01	Wine grape	nucleus	47.52	49.44
PGSC0003DMT400078394	Potato	nucleus	46.44	48.8
Zm00001d036977_P001	Maize	nucleus	42.95	45.58
Zm00001d053559_P007	Maize	mitochondrion	40.0	43.5
KRH60473	Soybean	cytosol	34.36	42.95
Zm00001d002505_P001	Maize	nucleus	31.68	42.75
Zm00001d046255_P035	Maize	nucleus	43.36	39.15
Zm00001d021105_P001	Maize	endoplasmic reticulum, plasma membrane	5.91	30.34
Zm00001d047607_P001	Maize	cytosol, plasma membrane, plastid	19.19	28.15
Zm00001d028920_P004	Maize	cytosol, plasma membrane, plastid	20.13	27.78
Zm00001d012429_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	5.91	27.67
Zm00001d022535_P004	Maize	endoplasmic reticulum, plasma membrane	19.06	26.49

Protein Annotations

Gene3D:1.10.1410.10	EntrezGene:103643777	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	UniProt:A0A1D6KZ09
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0031123	GO:GO:0043631
InterPro:NuclTrfase_I-like_C	ProteinID:ONM07618.1	ProteinID:ONM07620.1	ProteinID:ONM07624.1	PFAM:PF01909	PFAM:PF04926
PFAM:PF04928	PANTHER:PTHR10682	PANTHER:PTHR10682:SF22	InterPro:PolA_pol_RNA-bd_dom	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase
InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631	TMHMM:TMhelix	UniParc:UPI00022149F9
EnsemblPlantsGene:Zm00001d033448	EnsemblPlants:Zm00001d033448_P004	EnsemblPlants:Zm00001d033448_T004	SEG:seg	:	:

Description

Nuclear poly(A) polymerase 1

Coordinates

chr1:-:262998157..263004839

Molecular Weight (calculated)

84009.8 Da

IEP (calculated)

7.071

GRAVY (calculated)

-0.457

Length

745 amino acids

Sequence
(BLAST)

001: MSKVKNNNGY HGVTEPISLS GPTEKDLMQT AEVEKYLSDA GLYERQDEAI LREEVLGKLD QTVKAWIKKA TRISGYGEQF VHEANAKIFT FGSYRLGVHG
101: PGADIDTLCV GPRHATRNEY FFRWLHDILA EMPEVSELHP VPDAHVPVLG FKINGVSIDL LYANLAHAVI PEDLDLSQDS ILHNVDEQTV RSLNGCRVTD
201: QILRLVPNIL SFRTTLRFIR CWGKRRGVYS NVMGFLGGIN WAILVGRICQ LYPNASPSML ISRFFRVYSK WKWPNPVMLC HIEEGYLGLP VWDPRRNYRD
301: RGHQMPIITP AYPCMNSSYN VSVSTRYVMV QEFTQAFEIC QAIDEGKADW DALFEPYPFF ESYKNYLEVN ITARNEDDLR NWKGWVESRL RTLVLKIERY
401: SHEMILAHPY PKDFSDKSRP LHIFYFMGLW RKQTTQAQET EQFDIRGIVN EFKNTICAYQ HRKEGMDIEV SHVKRKEIPL FVFPGGVRPS RTSRTTHKNS
501: RAIPTRDVSA DDQVGNLLGV ASCSDAQHVP CKGSYMKQPE PDFAGGFQLP GSISLLPPSL PNKVVLNGSA NFHAESIESE HPEHYQESKF VAVQNTVCLV
601: VKQPNSLLPN SNNNSQLYGS DSSLNSSKRE CAGSAANNLL KLSPAIPATP DELDELISYQ TNQKDVNAEN NLEIGSENNL EQICSLRPQE SNNNLKRKAN
701: QELEPLELAV PSTGAAPQST GTAPRKPLRL RLTTLGKPKP AEGTS

Best Arabidopsis Sequence Match ( AT1G17980.1 )
(BLAST)

001: MASVQQNGQR FGVSEPISMG GPTEFDVIKT RELEKHLQDV GLYESKEEAV RREEVLGILD QIVKTWIKTI SRAKGLNDQL LHEANAKIFT FGSYRLGVHG
101: PGADIDTLCV GPRHATREGD FFGELQRMLS EMPEVTELHP VPDAHVPLMG FKLNGVSIDL LYAQLPLWVI PEDLDLSQDS ILQNADEQTV RSLNGCRVTD
201: QILRLVPNIQ NFRTTLRCMR FWAKRRGVYS NVSGFLGGIN WALLVARICQ LYPNALPNIL VSRFFRVFYQ WNWPNAIFLC SPDEGSLGLQ VWDPRINPKD
301: RLHIMPIITP AYPCMNSSYN VSESTLRIMK GEFQRGNEIC EAMESNKADW DTLFEPFAFF EAYKNYLQID ISAANVDDLR KWKGWVESRL RQLTLKIERH
401: FKMLHCHPHP HDFQDTSRPL HCSYFMGLQR KQGVPAAEGE QFDIRRTVEE FKHTVNAYTL WIPGMEISVG HIKRRSLPNF VFPGGVRPSH TSKGTWDSNR
501: RSEHRNSSTS SAPAATTTTT EMSSESKAGS NSPVDGKKRK WGDSETLTDQ PRNSKHIAVS VPVENCEGGS PNPSVGSICS SPMKDYCTNG KSEPISKDPP
601: ENVVAFSKDP PESLPIEKIA TPQAHETEEL EESFDFGNQV IEQISHKVAV LSATATIPPF EATSNGSPFP YEAVEELEVL PTRQPDAAHR PSVQQRKPII
701: KLSFTSLGKT NGK

Arabidopsis Description

PAPS1Nuclear poly(A) polymerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.