CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031010.1-P	Field mustard	nucleus	95.49	98.4
CDY21725	Canola	nucleus	98.45	98.31
CDX96740	Canola	nucleus	91.13	90.74
CDX83877	Canola	nucleus	90.85	90.59
AT1G17980.1	Thale cress	nucleus	87.46	87.1
CDY58017	Canola	cytosol, nucleus, plasma membrane	33.38	80.61
CDY17685	Canola	nucleus	72.39	76.04
CDX77811	Canola	nucleus	74.08	75.9
VIT_17s0000g03120.t01	Wine grape	cytosol, nucleus, plastid	61.83	67.43
Zm00001d031424_P001	Maize	cytosol	15.63	64.91
Zm00001d044377_P001	Maize	cytosol	13.66	62.58
Zm00001d040140_P001	Maize	cytosol	15.92	62.43
KRH39125	Soybean	nucleus	66.2	62.09
CDY52248	Canola	cytosol, nucleus, plastid	7.18	60.71
CDY65137	Canola	cytosol, nucleus, plastid	7.18	60.71
Os06t0319600-01	Rice	cytosol	10.99	60.47
KRH48590	Soybean	nucleus	64.37	60.37
Zm00001d016073_P001	Maize	cytosol	15.92	59.47
GSMUA_AchrUn_...	Banana	nucleus	60.99	58.28
Solyc05g008630.2.1	Tomato	nucleus	55.63	57.92
KRH60473	Soybean	cytosol	47.89	57.05
PGSC0003DMT400078394	Potato	nucleus	55.49	55.57
CDY69371	Canola	cytosol	6.2	52.38
TraesCS4A01G246800.1	Wheat	nucleus	53.1	51.79
TraesCS4D01G067100.1	Wheat	nucleus	52.96	51.58
TraesCS4B01G068100.1	Wheat	nucleus	52.82	51.44
HORVU4Hr1G011370.8	Barley	nucleus	52.96	49.74
Zm00001d033448_P004	Maize	nucleus	51.69	49.26
EER93704	Sorghum	cytosol	51.69	48.93
Zm00001d013599_P016	Maize	nucleus	51.69	48.93
CDX68897	Canola	nucleus	47.89	46.9
CDX75292	Canola	nucleus	48.03	46.78
CDX77017	Canola	nucleus	47.89	45.27
CDY35331	Canola	nucleus	47.75	44.49
CDY24682	Canola	nucleus	23.52	34.15
CDY05277	Canola	nucleus	23.66	32.75

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	GO:A0A078CYE8	EnsemblPlants:CDX81855
ProteinID:CDX81855	ProteinID:CDX81855.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004652	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779
GO:GO:0031123	GO:GO:0043631	EnsemblPlantsGene:GSBRNA2T00136801001	InterPro:NuclTrfase_I-like_C	PFAM:PF01909	PFAM:PF04926
PFAM:PF04928	PIRSF:PIRSF018425	PANTHER:PTHR10682	PANTHER:PTHR10682:SF22	InterPro:PolA_pol_RNA-bd_dom	InterPro:PolA_pol_cen_dom
InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631	TMHMM:TMhelix
UniParc:UPI0004EEC9BD	SEG:seg	:	:	:	:

Description

BnaC08g37460D

Coordinates

chrLK031826:-:1122734..1126952

Molecular Weight (calculated)

79525.3 Da

IEP (calculated)

6.427

GRAVY (calculated)

-0.509

Length

710 amino acids

Sequence
(BLAST)

001: MASVQQNGQR YGITEPISLG GPTELDVVKT RELEKYLQDV GLYESKEEAV RREEVLGRLD QIVKTWIKTI SRAKGLNDQL LHEANAEIFT FGSYRLGVHG
101: PGADIDTLCV GPRHATREGD FFGELQRMLS EMPDVTELHP VPDAHVPLMG FKLNGVSIDL LYAQLPLWVI PKDLDISQDS ILQNADEQTV RSLNGCRVTD
201: QILRLVPNIE NFRTTLRCMR FWAKRRGVYS NVSGFLGGIN WALLVARICQ LYPNALPNML ASRFFRVYTQ WRWPNPVLLC SMDEGSLGLQ VWDPRRNPKD
301: RLHMMPIITP AYPCMNSSYN VSASTLRIMT GEFQRGKDIC EAMEANKADW DTLFEPFAFF EAYKNYLQID ISAANVDDLR KWKGWVESRL RQLTLKIERH
401: TYDMLQCHPH PHDFQDASRP LHCSYFMGLQ RKQGVPAAEG EPFDIRRTVE EFKHTVNGYM LWIPGMEISV SHIKRRSLPS FVFPGGVRPS HASKGTWDSK
501: RRAEHRVSST ASAATTTTAT TTNETSSESK AGSNSPGDEK KRKRGDDETL ADQLRNSKHV AVPMPAENGE GGSPDPSVGS ICSSPMKDCC TNGKSDPIST
601: DPQENVVVLS KEDAPESHPI EKIATPQAPT SEETEELEGS FDFGNQVTAT GTIPPFEATT SNGSPFSNEA LEELEVLPMR QPEVTHRASV QQRKPIIKLN
701: FTSLGKTNGK

Best Arabidopsis Sequence Match ( AT1G17980.1 )
(BLAST)

001: MASVQQNGQR FGVSEPISMG GPTEFDVIKT RELEKHLQDV GLYESKEEAV RREEVLGILD QIVKTWIKTI SRAKGLNDQL LHEANAKIFT FGSYRLGVHG
101: PGADIDTLCV GPRHATREGD FFGELQRMLS EMPEVTELHP VPDAHVPLMG FKLNGVSIDL LYAQLPLWVI PEDLDLSQDS ILQNADEQTV RSLNGCRVTD
201: QILRLVPNIQ NFRTTLRCMR FWAKRRGVYS NVSGFLGGIN WALLVARICQ LYPNALPNIL VSRFFRVFYQ WNWPNAIFLC SPDEGSLGLQ VWDPRINPKD
301: RLHIMPIITP AYPCMNSSYN VSESTLRIMK GEFQRGNEIC EAMESNKADW DTLFEPFAFF EAYKNYLQID ISAANVDDLR KWKGWVESRL RQLTLKIERH
401: FKMLHCHPHP HDFQDTSRPL HCSYFMGLQR KQGVPAAEGE QFDIRRTVEE FKHTVNAYTL WIPGMEISVG HIKRRSLPNF VFPGGVRPSH TSKGTWDSNR
501: RSEHRNSSTS SAPAATTTTT EMSSESKAGS NSPVDGKKRK WGDSETLTDQ PRNSKHIAVS VPVENCEGGS PNPSVGSICS SPMKDYCTNG KSEPISKDPP
601: ENVVAFSKDP PESLPIEKIA TPQAHETEEL EESFDFGNQV IEQISHKVAV LSATATIPPF EATSNGSPFP YEAVEELEVL PTRQPDAAHR PSVQQRKPII
701: KLSFTSLGKT NGK

Arabidopsis Description

PAPS1Nuclear poly(A) polymerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.