Factsheet for Os06t0319600-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031424_P001	Maize	cytosol	58.91	44.44
Zm00001d040140_P001	Maize	cytosol	60.47	43.09
Zm00001d016073_P001	Maize	cytosol	58.91	40.0
Zm00001d044377_P001	Maize	cytosol	44.19	36.77
Os06t0558766-00	Rice	cytosol	44.96	25.0
TraesCS4A01G246800.1	Wheat	nucleus	76.74	13.6
TraesCS4B01G068100.1	Wheat	nucleus	76.74	13.58
TraesCS4D01G067100.1	Wheat	nucleus	75.97	13.44
HORVU4Hr1G011370.8	Barley	nucleus	77.52	13.23
Zm00001d013599_P016	Maize	nucleus	72.09	12.4
VIT_17s0000g03120.t01	Wine grape	cytosol, nucleus, plastid	62.02	12.29
EER93704	Sorghum	cytosol	71.32	12.27
Zm00001d033448_P004	Maize	nucleus	70.54	12.21
GSMUA_AchrUn_...	Banana	nucleus	66.67	11.57
CDX81855	Canola	nucleus	60.47	10.99
Bra016573.1-P	Field mustard	nucleus	58.91	10.98
Bra031010.1-P	Field mustard	nucleus	58.14	10.89
Solyc05g008630.2.1	Tomato	nucleus	57.36	10.85
CDY21725	Canola	nucleus	59.69	10.83
Bra024894.1-P	Field mustard	nucleus	55.81	10.71
CDX83877	Canola	nucleus	58.91	10.67
AT1G17980.1	Thale cress	nucleus	58.91	10.66
CDX96740	Canola	nucleus	58.91	10.66
CDY17685	Canola	nucleus	55.81	10.65
CDX77811	Canola	nucleus	56.59	10.53
PGSC0003DMT400078394	Potato	nucleus	56.59	10.3
VIT_01s0011g04320.t01	Wine grape	nucleus	56.59	10.2
KRH39125	Soybean	nucleus	59.69	10.17
Os02t0227400-01	Rice	extracellular	46.51	9.84
KRH48590	Soybean	nucleus	57.36	9.78
Os04t0588350-00	Rice	nucleus, plastid	41.09	9.53
KRH60473	Soybean	cytosol	36.43	7.89
Os03t0313300-01	Rice	mitochondrion	27.91	6.59
Os07t0688500-00	Rice	cytosol	25.58	6.3
CDY58017	Canola	cytosol, nucleus, plasma membrane	6.2	2.72
Os01t0702900-01	Rice	extracellular	1.55	1.55
Os06t0558700-01	Rice	nucleus	2.33	0.91

Protein Annotations

MapMan:16.2.1.1.1	Gene3D:3.30.460.10	UniProt:A0A0P0WW08	ProteinID:BAS97493.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006378	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016779	GO:GO:0031123
GO:GO:0043631	EnsemblPlantsGene:Os06g0319600	EnsemblPlants:Os06t0319600-01	PFAM:PF04928	PANTHER:PTHR10682	PANTHER:PTHR10682:SF29
InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	SUPFAM:SSF81301	UniParc:UPI000393A3E2	:	:

Description

Poly(A) polymerase, central domain domain containing protein. (Os06t0319600-01)

Coordinates

chr6:+:12403412..12410351

Molecular Weight (calculated)

14177.9 Da

IEP (calculated)

4.890

GRAVY (calculated)

-0.024

Length

129 amino acids

Sequence
(BLAST)

001: MAKSNNGNGY LGVTEPISLS GPTEKDVVRT QEVEKCLADA GLYESQEEAV SREEVLGKLD QIVKAWIKKA TRASGFGDQF VQEANAKIFT FGSYRLGVLC
101: TSCIFYSDCK RSCSINIAIT FCVIWFDAV

Best Arabidopsis Sequence Match ( AT1G17980.1 )
(BLAST)

001: MASVQQNGQR FGVSEPISMG GPTEFDVIKT RELEKHLQDV GLYESKEEAV RREEVLGILD QIVKTWIKTI SRAKGLNDQL LHEANAKIFT FGSYRLGVHG
101: PGADIDTLCV GPRHATREGD FFGELQRMLS EMPEVTELHP VPDAHVPLMG FKLNGVSIDL LYAQLPLWVI PEDLDLSQDS ILQNADEQTV RSLNGCRVTD
201: QILRLVPNIQ NFRTTLRCMR FWAKRRGVYS NVSGFLGGIN WALLVARICQ LYPNALPNIL VSRFFRVFYQ WNWPNAIFLC SPDEGSLGLQ VWDPRINPKD
301: RLHIMPIITP AYPCMNSSYN VSESTLRIMK GEFQRGNEIC EAMESNKADW DTLFEPFAFF EAYKNYLQID ISAANVDDLR KWKGWVESRL RQLTLKIERH
401: FKMLHCHPHP HDFQDTSRPL HCSYFMGLQR KQGVPAAEGE QFDIRRTVEE FKHTVNAYTL WIPGMEISVG HIKRRSLPNF VFPGGVRPSH TSKGTWDSNR
501: RSEHRNSSTS SAPAATTTTT EMSSESKAGS NSPVDGKKRK WGDSETLTDQ PRNSKHIAVS VPVENCEGGS PNPSVGSICS SPMKDYCTNG KSEPISKDPP
601: ENVVAFSKDP PESLPIEKIA TPQAHETEEL EESFDFGNQV IEQISHKVAV LSATATIPPF EATSNGSPFP YEAVEELEVL PTRQPDAAHR PSVQQRKPII
701: KLSFTSLGKT NGK

Arabidopsis Description

PAPS1Nuclear poly(A) polymerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.