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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • mitochondrion 2
  • cytosol 2
  • nucleus 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d044377_P001 Maize cytosol 82.46 90.97
Zm00001d040140_P001 Maize cytosol 95.91 90.61
Zm00001d016073_P001 Maize cytosol 95.32 85.79
Os06t0319600-01 Rice cytosol 44.44 58.91
Zm00001d033448_P004 Maize nucleus 97.08 22.28
Zm00001d013599_P016 Maize nucleus 92.98 21.2
EER93704 Sorghum cytosol 92.4 21.07
TraesCS4A01G246800.1 Wheat nucleus 82.46 19.37
TraesCS4B01G068100.1 Wheat nucleus 82.46 19.34
TraesCS4D01G067100.1 Wheat nucleus 82.46 19.34
HORVU4Hr1G011370.8 Barley nucleus 83.04 18.78
VIT_17s0000g03120.t01 Wine grape cytosol, nucleus, plastid 65.5 17.2
VIT_01s0011g04320.t01 Wine grape nucleus 67.25 16.06
Bra016573.1-P Field mustard nucleus 64.33 15.9
GSMUA_AchrUn_... Banana nucleus 69.01 15.88
CDY17685 Canola nucleus 62.57 15.83
CDY21725 Canola nucleus 65.5 15.75
Solyc05g008630.2.1 Tomato nucleus 62.57 15.69
CDX81855 Canola nucleus 64.91 15.63
Bra024894.1-P Field mustard nucleus 61.4 15.62
CDX83877 Canola nucleus 64.33 15.45
AT1G17980.1 Thale cress nucleus 64.33 15.43
CDX96740 Canola nucleus 64.33 15.43
CDX77811 Canola nucleus 61.4 15.15
PGSC0003DMT400078394 Potato nucleus 62.57 15.09
KRH39125 Soybean nucleus 66.08 14.93
KRH48590 Soybean nucleus 64.91 14.66
Zm00001d053559_P007 Maize mitochondrion 56.73 14.16
Zm00001d036977_P001 Maize nucleus 57.31 13.96
KRH60473 Soybean cytosol 47.37 13.59
Bra031010.1-P Field mustard nucleus 54.39 13.5
Zm00001d002505_P001 Maize nucleus 42.69 13.22
Zm00001d046255_P035 Maize nucleus 57.31 11.88
Zm00001d047607_P001 Maize cytosol, plasma membrane, plastid 29.82 10.04
Zm00001d028920_P004 Maize cytosol, plasma membrane, plastid 31.58 10.0
Zm00001d022535_P004 Maize endoplasmic reticulum, plasma membrane 30.99 9.89
CDY58017 Canola cytosol, nucleus, plasma membrane 16.37 9.52
Zm00001d021105_P001 Maize endoplasmic reticulum, plasma membrane 2.92 3.45
Zm00001d012429_P002 Maize endoplasmic reticulum, extracellular, plasma membrane 2.92 3.14
Protein Annotations
EntrezGene:103641974MapMan:16.2.1.1.1Gene3D:3.30.460.10UniProt:A0A1D6KIM6GO:GO:0003674GO:GO:0003824
GO:GO:0004652GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016740GO:GO:0016779GO:GO:0043631
ProteinID:ONM02840.1PFAM:PF01909PFAM:PF04928PANTHER:PTHR10682PANTHER:PTHR10682:SF22InterPro:PolA_pol_cen_dom
InterPro:PolyA_polymeraseInterPro:Polymerase_NTP_transf_domSUPFAM:SSF81301UniParc:UPI0004DEBCAFEnsemblPlantsGene:Zm00001d031424EnsemblPlants:Zm00001d031424_P001
EnsemblPlants:Zm00001d031424_T001:::::
Description
Nuclear poly(A) polymerase 1
Coordinates
chr1:-:189598106..189599433
Molecular Weight (calculated)
19157.9 Da
IEP (calculated)
6.304
GRAVY (calculated)
-0.234
Length
171 amino acids
Sequence
(BLAST)
001: MSKVKNNSGY HGVTEPISLS GPTEKYLMQT AEVEKYLSDA RLDERQDEAI LREEVLGKLD QTVKAWIKKA TRISGYGEQF VHEANAKIFT FGSYRLGVHG
101: PGADIDTLCV VPRHATRNEY FFRWLHDILA EMPEVSELHP VPDAHVPVLG FKINGVSIDL LYANLAHAVI P
Best Arabidopsis Sequence Match ( AT1G17980.1 )
(BLAST)
001: MASVQQNGQR FGVSEPISMG GPTEFDVIKT RELEKHLQDV GLYESKEEAV RREEVLGILD QIVKTWIKTI SRAKGLNDQL LHEANAKIFT FGSYRLGVHG
101: PGADIDTLCV GPRHATREGD FFGELQRMLS EMPEVTELHP VPDAHVPLMG FKLNGVSIDL LYAQLPLWVI PEDLDLSQDS ILQNADEQTV RSLNGCRVTD
201: QILRLVPNIQ NFRTTLRCMR FWAKRRGVYS NVSGFLGGIN WALLVARICQ LYPNALPNIL VSRFFRVFYQ WNWPNAIFLC SPDEGSLGLQ VWDPRINPKD
301: RLHIMPIITP AYPCMNSSYN VSESTLRIMK GEFQRGNEIC EAMESNKADW DTLFEPFAFF EAYKNYLQID ISAANVDDLR KWKGWVESRL RQLTLKIERH
401: FKMLHCHPHP HDFQDTSRPL HCSYFMGLQR KQGVPAAEGE QFDIRRTVEE FKHTVNAYTL WIPGMEISVG HIKRRSLPNF VFPGGVRPSH TSKGTWDSNR
501: RSEHRNSSTS SAPAATTTTT EMSSESKAGS NSPVDGKKRK WGDSETLTDQ PRNSKHIAVS VPVENCEGGS PNPSVGSICS SPMKDYCTNG KSEPISKDPP
601: ENVVAFSKDP PESLPIEKIA TPQAHETEEL EESFDFGNQV IEQISHKVAV LSATATIPPF EATSNGSPFP YEAVEELEVL PTRQPDAAHR PSVQQRKPII
701: KLSFTSLGKT NGK
Arabidopsis Description
PAPS1Nuclear poly(A) polymerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMT2]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.