CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g03120.t01	Wine grape	cytosol, nucleus, plastid	59.56	54.53
KRH39125	Soybean	nucleus	68.96	54.29
KRH48590	Soybean	nucleus	67.62	53.24
CDY58017	Canola	cytosol, nucleus, plasma membrane	25.5	51.7
Bra016573.1-P	Field mustard	nucleus	57.05	49.13
CDX81855	Canola	nucleus	57.05	47.89
CDX96740	Canola	nucleus	57.05	47.69
CDY21725	Canola	nucleus	56.88	47.68
CDX83877	Canola	nucleus	56.88	47.61
Zm00001d031424_P001	Maize	cytosol	13.59	47.37
Zm00001d044377_P001	Maize	cytosol	12.25	47.1
Bra031010.1-P	Field mustard	nucleus	54.03	46.73
AT1G17980.1	Thale cress	nucleus	55.87	46.7
Zm00001d040140_P001	Maize	cytosol	13.76	45.3
GSMUA_AchrUn_...	Banana	nucleus	56.38	45.22
Bra024894.1-P	Field mustard	nucleus	50.67	44.94
CDY17685	Canola	nucleus	50.84	44.82
Zm00001d016073_P001	Maize	cytosol	14.26	44.74
CDX77811	Canola	nucleus	51.01	43.87
Solyc05g008630.2.1	Tomato	nucleus	48.32	42.23
PGSC0003DMT400078394	Potato	nucleus	48.49	40.76
Os06t0319600-01	Rice	cytosol	7.89	36.43
TraesCS4D01G067100.1	Wheat	nucleus	42.79	34.98
TraesCS4A01G246800.1	Wheat	nucleus	42.62	34.89
TraesCS4B01G068100.1	Wheat	nucleus	42.62	34.84
Zm00001d033448_P004	Maize	nucleus	42.95	34.36
EER93704	Sorghum	cytosol	43.12	34.27
Zm00001d013599_P016	Maize	nucleus	43.12	34.27
KRH62113	Soybean	nucleus	41.78	34.2
KRH44269	Soybean	nucleus	40.27	34.09
KRH47201	Soybean	nucleus	40.1	33.95
KRH52804	Soybean	nucleus	41.28	33.61
HORVU4Hr1G011370.8	Barley	nucleus	42.28	33.33

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	UniProt:A0A0R0K592	EMBL:ACUP02003367	EnsemblPlantsGene:GLYMA_05G242500
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0031123	GO:GO:0043631
EnsemblPlants:KRH60473	ProteinID:KRH60473	ProteinID:KRH60473.1	InterPro:NuclTrfase_I-like_C	PFAM:PF04928	PANTHER:PTHR10682
PANTHER:PTHR10682:SF29	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631
UniParc:UPI0006EDC35F	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:41746389..41751249

Molecular Weight (calculated)

66882.1 Da

IEP (calculated)

5.495

GRAVY (calculated)

-0.501

Length

596 amino acids

Sequence
(BLAST)

001: MGNPGLNNRD NGQQQRLGIT EPISLGGPTE YDVIKTRELE KYLQDAGLYE NQQEAIVKIW VKIISRAKGL NKQLVHSPGA NIDTLCVGPR HASRDEDFFG
101: DLHRMLSKMP EVTELHPVPD AHVPVMRFKF NGVYIDLLYA KLSLRDLDIS QELILQNADE ETVCSLNGCR VTDKLFPNAL PNMLVSRFFR VYTQWCWPNP
201: VMLCAIEEGS VGLQIWDPRR YPNDRFHLMP IITPAYACMN SSYNVSSITL CIMTEEFQRG NEICENYLQI DISGENADDL RKWKGWVESH LRQHIYGMLQ
301: CHPHPGDSSD KSRPFHCSNF MALQRKQGVP VNDGGQFDIR LTVEEFKHSV NIYTLWIPGM DVHVPHVKHR NIPTFVFPGS VRPSHPSKLR VSGHAQAEKS
401: QEGKMAVLGA NDDRKRKQAE DSVDSLRNSK SMASLPPSSR EVHEDENPIS PASSCFVKSN DSEINSTSEQ QSEKPDLKSS GECPGDRETN GSVTSNLQVN
501: AALTATDTSS SKEAEKLAIE KIMCGPYDAQ QVFSGEPDEL EDDLEFRNQV KDFVAAKPII PKKETTSATL LYSNGGSEEL ESLCVWLPLV VASFFN

Best Arabidopsis Sequence Match ( AT1G17980.1 )
(BLAST)

001: MASVQQNGQR FGVSEPISMG GPTEFDVIKT RELEKHLQDV GLYESKEEAV RREEVLGILD QIVKTWIKTI SRAKGLNDQL LHEANAKIFT FGSYRLGVHG
101: PGADIDTLCV GPRHATREGD FFGELQRMLS EMPEVTELHP VPDAHVPLMG FKLNGVSIDL LYAQLPLWVI PEDLDLSQDS ILQNADEQTV RSLNGCRVTD
201: QILRLVPNIQ NFRTTLRCMR FWAKRRGVYS NVSGFLGGIN WALLVARICQ LYPNALPNIL VSRFFRVFYQ WNWPNAIFLC SPDEGSLGLQ VWDPRINPKD
301: RLHIMPIITP AYPCMNSSYN VSESTLRIMK GEFQRGNEIC EAMESNKADW DTLFEPFAFF EAYKNYLQID ISAANVDDLR KWKGWVESRL RQLTLKIERH
401: FKMLHCHPHP HDFQDTSRPL HCSYFMGLQR KQGVPAAEGE QFDIRRTVEE FKHTVNAYTL WIPGMEISVG HIKRRSLPNF VFPGGVRPSH TSKGTWDSNR
501: RSEHRNSSTS SAPAATTTTT EMSSESKAGS NSPVDGKKRK WGDSETLTDQ PRNSKHIAVS VPVENCEGGS PNPSVGSICS SPMKDYCTNG KSEPISKDPP
601: ENVVAFSKDP PESLPIEKIA TPQAHETEEL EESFDFGNQV IEQISHKVAV LSATATIPPF EATSNGSPFP YEAVEELEVL PTRQPDAAHR PSVQQRKPII
701: KLSFTSLGKT NGK

Arabidopsis Description

PAPS1Nuclear poly(A) polymerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.