CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65137	Canola	cytosol, nucleus, plastid	11.9	41.67
CDY52248	Canola	cytosol, nucleus, plastid	11.9	41.67
CDY17685	Canola	nucleus	90.48	39.35
CDX77811	Canola	nucleus	89.8	38.1
CDY21725	Canola	nucleus	80.95	33.47
CDX81855	Canola	nucleus	80.61	33.38
CDX96740	Canola	nucleus	79.59	32.82
CDX83877	Canola	nucleus	79.25	32.72
AT1G17980.1	Thale cress	nucleus	77.89	32.12
VIT_17s0000g03120.t01	Wine grape	cytosol, nucleus, plastid	71.09	32.1
CDY69371	Canola	cytosol	8.5	29.76
GSMUA_AchrUn_...	Banana	nucleus	71.77	28.4
Solyc05g008630.2.1	Tomato	nucleus	64.29	27.71
KRH39125	Soybean	nucleus	71.09	27.61
KRH48590	Soybean	nucleus	69.73	27.08
PGSC0003DMT400078394	Potato	nucleus	64.63	26.8
TraesCS4D01G067100.1	Wheat	nucleus	64.29	25.93
TraesCS4A01G246800.1	Wheat	nucleus	63.95	25.82
TraesCS4B01G068100.1	Wheat	nucleus	63.95	25.79
KRH60473	Soybean	cytosol	51.7	25.5
Zm00001d033448_P004	Maize	nucleus	64.29	25.37
Zm00001d013599_P016	Maize	nucleus	64.63	25.33
EER93704	Sorghum	cytosol	64.63	25.33
HORVU4Hr1G011370.8	Barley	nucleus	64.29	25.0
CDX68897	Canola	nucleus	59.18	24.0
CDX75292	Canola	nucleus	59.18	23.87
CDX77017	Canola	nucleus	56.8	22.24
CDY35331	Canola	nucleus	56.8	21.92
Zm00001d044377_P001	Maize	cytosol	9.86	18.71
Zm00001d031424_P001	Maize	cytosol	9.52	16.37
Zm00001d016073_P001	Maize	cytosol	10.54	16.32
Zm00001d040140_P001	Maize	cytosol	9.86	16.02
CDY24682	Canola	nucleus	26.53	15.95
CDY05277	Canola	nucleus	26.87	15.4
Os06t0319600-01	Rice	cytosol	2.72	6.2

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	GO:A0A078J353	UniProt:A0A078J353	EnsemblPlants:CDY58017	ProteinID:CDY58017
ProteinID:CDY58017.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004652
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0031123
GO:GO:0043631	EnsemblPlantsGene:GSBRNA2T00023003001	InterPro:NuclTrfase_I-like_C	PFAM:PF04928	PANTHER:PTHR10682	PANTHER:PTHR10682:SF22
InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631	UniParc:UPI0004EE6476

Description

BnaC07g48830DBnaC07g48830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J353]

Coordinates

chrLK033626:-:8482..9613

Molecular Weight (calculated)

33976.5 Da

IEP (calculated)

9.398

GRAVY (calculated)

-0.162

Length

294 amino acids

Sequence
(BLAST)

001: MLSELPEVTE LHSVPDAYVP LMGFKLNGVS IGLPYAKLPL WIIPEDLDIS QDSILQNADE QTVRSLNGCR VTDQIFRLVP NIQSFRTTLR RIRFWAKKRG
101: VYSNVSGFLG GINWALLVAR ICQLYPNALP NMLVSRFFRV YTQWHWPNPI LLCSIDDEGS SSLGLQVWDP RRNPKDLLHK MPIITPAYPC MNSNMLQFQD
201: DSRPLKCCLF MGLQRKQGVE AVEPFDIRRT IEEFKNTVYC YMLWVHEMEV SVSHVMRRSI PSFVFPGGVR PLRNLKRTRH SKRSSEQIVS STIY

Best Arabidopsis Sequence Match ( AT1G17980.1 )
(BLAST)

001: MASVQQNGQR FGVSEPISMG GPTEFDVIKT RELEKHLQDV GLYESKEEAV RREEVLGILD QIVKTWIKTI SRAKGLNDQL LHEANAKIFT FGSYRLGVHG
101: PGADIDTLCV GPRHATREGD FFGELQRMLS EMPEVTELHP VPDAHVPLMG FKLNGVSIDL LYAQLPLWVI PEDLDLSQDS ILQNADEQTV RSLNGCRVTD
201: QILRLVPNIQ NFRTTLRCMR FWAKRRGVYS NVSGFLGGIN WALLVARICQ LYPNALPNIL VSRFFRVFYQ WNWPNAIFLC SPDEGSLGLQ VWDPRINPKD
301: RLHIMPIITP AYPCMNSSYN VSESTLRIMK GEFQRGNEIC EAMESNKADW DTLFEPFAFF EAYKNYLQID ISAANVDDLR KWKGWVESRL RQLTLKIERH
401: FKMLHCHPHP HDFQDTSRPL HCSYFMGLQR KQGVPAAEGE QFDIRRTVEE FKHTVNAYTL WIPGMEISVG HIKRRSLPNF VFPGGVRPSH TSKGTWDSNR
501: RSEHRNSSTS SAPAATTTTT EMSSESKAGS NSPVDGKKRK WGDSETLTDQ PRNSKHIAVS VPVENCEGGS PNPSVGSICS SPMKDYCTNG KSEPISKDPP
601: ENVVAFSKDP PESLPIEKIA TPQAHETEEL EESFDFGNQV IEQISHKVAV LSATATIPPF EATSNGSPFP YEAVEELEVL PTRQPDAAHR PSVQQRKPII
701: KLSFTSLGKT NGK

Arabidopsis Description

PAPS1Nuclear poly(A) polymerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.