CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52248	Canola	cytosol, nucleus, plastid	100.0	100.0
CDY69371	Canola	cytosol	60.71	60.71
Os06t0558766-00	Rice	cytosol	69.05	25.0
CDY58017	Canola	cytosol, nucleus, plasma membrane	41.67	11.9
CDX68897	Canola	nucleus	76.19	8.83
CDX75292	Canola	nucleus	76.19	8.78
CDX77017	Canola	nucleus	77.38	8.66
CDY35331	Canola	nucleus	77.38	8.53
CDX83877	Canola	nucleus	61.9	7.3
CDX96740	Canola	nucleus	61.9	7.29
CDX81855	Canola	nucleus	60.71	7.18
CDY21725	Canola	nucleus	60.71	7.17
CDY17685	Canola	nucleus	57.14	7.1
CDX77811	Canola	nucleus	57.14	6.93
CDY24682	Canola	nucleus	35.71	6.13
CDY05277	Canola	nucleus	35.71	5.85
Os06t0558700-01	Rice	nucleus	0.0	0.0

Protein Annotations

MapMan:16.2.1.1.1	Gene3D:3.30.460.10	GO:A0A078IT70	UniProt:A0A078IT70	ProteinID:CDY52248.1	EnsemblPlants:CDY65137
ProteinID:CDY65137	ProteinID:CDY65137.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004652	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016740	GO:GO:0043631	EnsemblPlantsGene:GSBRNA2T00044222001	PFAM:PF04928	PANTHER:PTHR10682
PANTHER:PTHR10682:SF29	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	SUPFAM:SSF81301	UniParc:UPI0004EEC986	:

Description

BnaAnng20280DBnaAnng20280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IT70]

Coordinates

chrLK034666:+:22395..23260

Molecular Weight (calculated)

8987.7 Da

IEP (calculated)

4.090

GRAVY (calculated)

0.135

Length

84 amino acids

Sequence
(BLAST)

1: MGRGADIDTL CIGSSYVNRE FQGISIDLLY ASVSLLVIPQ DLDVSNSSVQ CNVDEQTSRS LNGGRVADQI LKLVQNLGVG SIQM

Best Arabidopsis Sequence Match ( AT2G25850.5 )
(BLAST)

001: MVSTQQRTDD DSSQPVKASL KSYGITEPLS IAGPSAADVK RNLELEKFLV DEGLYESKEE TMRREEVVVR IDQIVKHWVK QLTRQRGYTD QMVEDANAVI
101: FTFGSYRLGV HGPMADIDTL CVGPSYVNRE EDFFIFFRDI LAEMEEVTEL QPVTDAHVPV MKFKFQGISI DLLYASISLL VIPQDLDISN SSVLCDVDEQ
201: TVRSLNGCRV ADQILKLVPN SEHFRTTLRC LKYWAKKRGV YSNVTGFLGG VNWALLVARL CQFYPNAIPS MLVSRFFRVY TQWRWPNPVM LCAIEEDDLS
301: FPVWDPRKNH RDRYHLMPII TPAYPCMNSS YNVSQSTLRV MTEQFQFGNT ICQEIELNKQ HWSSLFQQYM FFEAYKNYLQ VDVLAADAED LLAWKGWVES
401: RFRQLTLKIE RDTNGMLMCH PQPNEYVDTS KQFRHCAFFM GLQRADGFGG QECQQFDIRG TVDEFRQEVN MYMFWRPGMD VHVSHVRRRQ LPSFVFPNGY
501: KRSRQSRHQS QQCREPGDEG VGSLSDSVER YAKRKNDDEI MNSRPEKREK RASCSLHTLD AASPDSSGIT TSGTPQIGIV PGPRAECLVT GDLVCNVTSL
601: PNVEVEAEKF ISKITELRKF SQYEHTSGSE QILEVDSRAL VQSYHDLAEP VAKHVRPDLS ALLACEGGQN KEIGHDMGSE SINDTDTQHL PRRLNVNEDV
701: DEVEREAKLG EIAGGVLWNG HCGRNLDHEG FVTPANLDSA VENRNLHSDG LFKSGLPEEL QVFILTHVIW H

Arabidopsis Description

PAPS2PAPS2 [Source:UniProtKB/TrEMBL;Acc:A0A178VXR1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.