CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024894.1-P	Field mustard	nucleus	96.75	97.32
CDX77811	Canola	nucleus	92.75	90.48
CDY58017	Canola	cytosol, nucleus, plasma membrane	39.35	90.48
CDY21725	Canola	nucleus	76.18	72.43
CDX81855	Canola	nucleus	76.04	72.39
CDX83877	Canola	nucleus	75.44	71.63
CDX96740	Canola	nucleus	75.44	71.53
AT1G17980.1	Thale cress	nucleus	72.78	69.0
Zm00001d031424_P001	Maize	cytosol	15.83	62.57
Zm00001d040140_P001	Maize	cytosol	16.42	61.33
VIT_17s0000g03120.t01	Wine grape	cytosol, nucleus, plastid	58.73	60.98
Zm00001d044377_P001	Maize	cytosol	13.91	60.65
Zm00001d016073_P001	Maize	cytosol	16.27	57.89
CDY52248	Canola	cytosol, nucleus, plastid	7.1	57.14
CDY65137	Canola	cytosol, nucleus, plastid	7.1	57.14
Os06t0319600-01	Rice	cytosol	10.65	55.81
KRH39125	Soybean	nucleus	61.09	54.56
KRH48590	Soybean	nucleus	59.76	53.37
Solyc05g008630.2.1	Tomato	nucleus	53.55	53.08
GSMUA_AchrUn_...	Banana	nucleus	56.8	51.68
KRH60473	Soybean	cytosol	44.82	50.84
PGSC0003DMT400078394	Potato	nucleus	53.11	50.63
CDY69371	Canola	cytosol	6.21	50.0
TraesCS4D01G067100.1	Wheat	nucleus	51.04	47.33
TraesCS4A01G246800.1	Wheat	nucleus	50.89	47.25
TraesCS4B01G068100.1	Wheat	nucleus	50.89	47.19
Zm00001d033448_P004	Maize	nucleus	50.59	45.91
Zm00001d013599_P016	Maize	nucleus	50.89	45.87
HORVU4Hr1G011370.8	Barley	nucleus	51.18	45.77
EER93704	Sorghum	cytosol	50.59	45.6
CDX68897	Canola	nucleus	47.49	44.28
CDX75292	Canola	nucleus	47.49	44.03
CDX77017	Canola	nucleus	47.49	42.74
CDY35331	Canola	nucleus	47.34	41.99
CDY24682	Canola	nucleus	23.22	32.11
CDY05277	Canola	nucleus	23.82	31.38

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	GO:A0A078FT22	UniProt:A0A078FT22
EnsemblPlants:CDY17685	ProteinID:CDY17685	ProteinID:CDY17685.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0031123	GO:GO:0043631	GO:GO:0046872
EnsemblPlantsGene:GSBRNA2T00001905001	InterPro:NuclTrfase_I-like_C	PFAM:PF01909	PFAM:PF04926	PFAM:PF04928	PIRSF:PIRSF018425
PANTHER:PTHR10682	PANTHER:PTHR10682:SF29	InterPro:PolA_pol_RNA-bd_dom	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom
SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631	UniParc:UPI0004EE3013	SEG:seg	:

Description

BnaA06g35040DBnaA06g35040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FT22]

Coordinates

chrLK032076:+:578320..580350

Molecular Weight (calculated)

76456.5 Da

IEP (calculated)

8.399

GRAVY (calculated)

-0.428

Length

676 amino acids

Sequence
(BLAST)

001: MNKVKSMASV QQNRQIRYGI TEPISLVGPT ELDVTKTKAL EKYLQDAGLY ESNDEALRRE EVLGRLDEIV KTWIKKISRD KGLSDETVEQ ANAKIFTFGS
101: YRLKVHGPGA DIDTLCVGPR YATRGNGFFG ELHRMLSELP EVTELHSVPD AYVPLMGFKL NGVSIDLLYA KLPLWIIPED LDLSKDSILQ NADEQTVRSL
201: NGCRVTDKIF RLVPNIQSFR TTLRCIRFWA KKRGVYSNVS GFLGGINWAL LVARICQLYP NALPNMLVSR FFRVYTQWRW PNPILLCSID EDEGSSLGLQ
301: VWDPRRNPKD LLHKMPIITP AYPCMNSSYN VSASTLRIMT GEFQRGRDVC AAMEADQWDT LFEPFGFFEA YKNYLQINIS ASNVEDLKKW RGWVESRFRQ
401: LTLVIERHTY DMLQCHPHPH GFHDDTRPLQ CSLFMGLQRK EGVEAGGGEP FDIRRTIEEF KQTVYGYMLW VHGMEVSVSH VMRRSIPSFV FPGGVRPLRD
501: SKGTRDSKRS SEQRVSSTVS SSSTITSCER RGGKKRKLGG DETLTDQLRN SKRVAVSVHV ENGEDGSPNS SAGSICSAPM KVGESHPVEK IDIPQDSHSQ
601: ESEEVEDNFG FRNQVVKQIP SKDAFSKGAV EVEELEDVPM QRPVVTPKAS VQLRKPIIKL NFTSLSMTNA KNLRAC

Best Arabidopsis Sequence Match ( AT1G17980.1 )
(BLAST)

001: MASVQQNGQR FGVSEPISMG GPTEFDVIKT RELEKHLQDV GLYESKEEAV RREEVLGILD QIVKTWIKTI SRAKGLNDQL LHEANAKIFT FGSYRLGVHG
101: PGADIDTLCV GPRHATREGD FFGELQRMLS EMPEVTELHP VPDAHVPLMG FKLNGVSIDL LYAQLPLWVI PEDLDLSQDS ILQNADEQTV RSLNGCRVTD
201: QILRLVPNIQ NFRTTLRCMR FWAKRRGVYS NVSGFLGGIN WALLVARICQ LYPNALPNIL VSRFFRVFYQ WNWPNAIFLC SPDEGSLGLQ VWDPRINPKD
301: RLHIMPIITP AYPCMNSSYN VSESTLRIMK GEFQRGNEIC EAMESNKADW DTLFEPFAFF EAYKNYLQID ISAANVDDLR KWKGWVESRL RQLTLKIERH
401: FKMLHCHPHP HDFQDTSRPL HCSYFMGLQR KQGVPAAEGE QFDIRRTVEE FKHTVNAYTL WIPGMEISVG HIKRRSLPNF VFPGGVRPSH TSKGTWDSNR
501: RSEHRNSSTS SAPAATTTTT EMSSESKAGS NSPVDGKKRK WGDSETLTDQ PRNSKHIAVS VPVENCEGGS PNPSVGSICS SPMKDYCTNG KSEPISKDPP
601: ENVVAFSKDP PESLPIEKIA TPQAHETEEL EESFDFGNQV IEQISHKVAV LSATATIPPF EATSNGSPFP YEAVEELEVL PTRQPDAAHR PSVQQRKPII
701: KLSFTSLGKT NGK

Arabidopsis Description

PAPS1Nuclear poly(A) polymerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.