CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77591
CDX88655
CDX91600
CDX98205
CDY09421
CDY11833
CDY12057
CDY43886
CDY46934
CDY66642
CDY70580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06560.1	CDX77591	AT1G30460.1	16897494
AT3G06560.1	CDX98205	AT1G30460.1	16897494
AT3G06560.1	CDY12057	AT1G30460.1	16897494
AT3G06560.1	CDX77591	AT1G30460.1	18479511
AT3G06560.1	CDX98205	AT1G30460.1	18479511
AT3G06560.1	CDY12057	AT1G30460.1	18479511
AT3G06560.1	CDY09421	AT2G01730.1	16897494
AT3G06560.1	CDY66642	AT2G01730.1	16897494
AT3G06560.1	CDX91600	AT5G51660.1	16897494
AT3G06560.1	CDY46934	AT5G51660.1	16897494
AT3G06560.1	CDX88655	AT5G58040.1	18479511
AT3G06560.1	CDY11833	AT5G58040.1	18479511
AT3G06560.1	CDY43886	AT5G58040.1	18479511
AT3G06560.1	CDY70580	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24682	Canola	nucleus	91.03	95.5
AT3G06560.1	Thale cress	nucleus	75.44	76.33
PGSC0003DMT400074732	Potato	cytosol, peroxisome, plastid	51.85	53.31
Solyc01g058260.2.1	Tomato	cytosol, peroxisome, plastid	49.32	52.82
Solyc12g099180.1.1	Tomato	cytosol	44.25	52.18
VIT_05s0077g00650.t01	Wine grape	plastid	55.95	50.98
PGSC0003DMT400011757	Potato	nucleus	52.24	47.86
HORVU0Hr1G029140.2	Barley	cytosol	40.74	45.53
HORVU0Hr1G035930.1	Barley	cytosol	40.74	45.53
GSMUA_Achr8P29920_001	Banana	cytosol, golgi, plastid	48.54	44.7
TraesCS2A01G096500.1	Wheat	cytosol, mitochondrion, nucleus, vacuole	42.88	44.18
Zm00001d021105_P001	Maize	endoplasmic reticulum, plasma membrane	12.48	44.14
Os07t0688500-00	Rice	cytosol	42.5	41.6
TraesCS2D01G095000.1	Wheat	cytosol	42.69	41.4
TraesCS2B01G112000.1	Wheat	cytosol, plasma membrane, plastid	42.69	41.24
Zm00001d012429_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	12.67	40.88
Zm00001d022535_P004	Maize	endoplasmic reticulum, plasma membrane	41.13	39.37
Zm00001d047607_P001	Maize	cytosol, plasma membrane, plastid	38.6	38.98
Zm00001d028920_P004	Maize	cytosol, plasma membrane, plastid	40.74	38.7
Os03t0313300-01	Rice	mitochondrion	40.94	38.46
KXG36988	Sorghum	endoplasmic reticulum, plasma membrane	41.13	38.22
HORVU2Hr1G016100.3	Barley	cytosol	39.18	37.92
HORVU4Hr1G052840.1	Barley	plastid	39.57	37.45
TraesCS4B01G180500.1	Wheat	nucleus	38.99	37.04
TraesCS4A01G123900.1	Wheat	nucleus	38.99	37.04
TraesCS4D01G182000.1	Wheat	nucleus	38.6	36.67
CDY65137	Canola	cytosol, nucleus, plastid	5.85	35.71
CDY52248	Canola	cytosol, nucleus, plastid	5.85	35.71
OQU92698	Sorghum	cytosol, plasma membrane, plastid	39.77	33.72
CDY69371	Canola	cytosol	5.26	32.14
CDY58017	Canola	cytosol, nucleus, plasma membrane	15.4	26.87
CDX75292	Canola	nucleus	34.11	24.01
CDX68897	Canola	nucleus	33.92	24.0
CDY17685	Canola	nucleus	31.38	23.82
CDY21725	Canola	nucleus	32.94	23.77
CDX81855	Canola	nucleus	32.75	23.66
CDX83877	Canola	nucleus	32.55	23.46
CDX96740	Canola	nucleus	32.36	23.28
CDX77017	Canola	nucleus	33.92	23.17
CDX77811	Canola	nucleus	31.19	23.09
CDY35331	Canola	nucleus	34.11	22.97

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	GO:A0A078EWD5	EnsemblPlants:CDY05277
ProteinID:CDY05277	ProteinID:CDY05277.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004652	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779
GO:GO:0031123	GO:GO:0043631	EnsemblPlantsGene:GSBRNA2T00120103001	InterPro:NuclTrfase_I-like_C	PFAM:PF01909	PFAM:PF04928
PIRSF:PIRSF018425	PANTHER:PTHR10682	PANTHER:PTHR10682:SF20	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom
SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631	UniParc:UPI0004EE910F	:	:

Description

BnaC05g45260D

Coordinates

chrLK031960:+:810125..812581

Molecular Weight (calculated)

58308.0 Da

IEP (calculated)

8.170

GRAVY (calculated)

-0.199

Length

513 amino acids

Sequence
(BLAST)

001: MRRGGERYTG LPPYMAELEQ ECSVSLRQLM VNEGLIPSPE DDKKRRSVIH MLQRIVVRWI KIVAWKRRLP QHHINATNAT IIPYGSYGLG VHGSESDIDA
101: LCIGPFFATI TEDFFIDLHD LLKSRAEVSE VHCVKDAKVP LIRFKFDGIL VDLPYAQLRV LSIPNMVDVL NPFFLRDIDD TSWRSLSGVR ANQCILQIVP
201: SVELFQSLLR CVKLWAKRRG VYGNLNGFLG GVHMAILAAF VCGYNPNATL SSLVASFFST FAYWQWPTPV VLLRDAYAAT GSPPGLMPIQ LPCGGRQYCN
301: SNVTRSTYCK IMSEFHRGHH LTKGYLKHGF NWNSLFEPYP YATTYAWFVK IHLSASNEED LSDWVGWVKS RFRSLLIKIE EVFGLCDPNP TEHLEACEKQ
401: PNIVYYWGLH LRTVNVSDIE SVETDFLKNV NNSGSFQGSV GGIQLSVVQT SQLPKNVECD TSNRNKRVTR TCWRVRDDNH CKDKPVYSRH LPGYVVGYEK
501: INDRDAESTD VKC

Best Arabidopsis Sequence Match ( AT3G06560.1 )
(BLAST)

001: MKKGGGRNKG FPQDDESSIS LRQLMVNEGL IPSLEDEVKR RGVINQLRKI VVRWVKNVAW QHRLPQNQID ATNATILPYG SYGLGVYGSE SDIDALCIGP
101: FFASIAEDFF ISLRDMLKSR REVSELHCVK DAKVPLIRFK FDGILVDLPY AQLRVLSIPN NVDVLNPFFL RDIDETSWKI LSGVRANKCI LQLVPSLELF
201: QSLLRCVKLW AKRRGVYGNL NGFLGGVHMA ILAAFVCGYQ PNATLSSLLA NFFYTFAHWQ WPTPVVLLED TYPSTGAPPG LMPIQLPCGS HQYCNSTITR
301: STFYKIVAEF LLGHNLTKDY LKLNFSWKDL FELYPYANTY TWFTKIHLSA ANQEDLSDWV GWVKSRFRCL LIKIEEVYGI CDPNPTEYVE TYTKQPNIVF
401: YWGLQLRTIN VSDIESVKID FLKNVNSGSF RGTVGRIQLT LVKASQLPKN GECGSNNRSK KVTKTCWRIR EDKQCNNVPV YSKHLPGYVV GYQKMVNREA
501: DGMEVKC

Arabidopsis Description

PAPS3Nuclear poly(A) polymerase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q56XM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.