Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029588.1-P | Field mustard | nucleus | 77.32 | 76.26 |
| CDY24682 | Canola | nucleus | 73.37 | 76.07 |
| CDY05277 | Canola | nucleus | 76.33 | 75.44 |
| Solyc12g099180.1.1 | Tomato | cytosol | 46.15 | 53.79 |
| PGSC0003DMT400074732 | Potato | cytosol, peroxisome, plastid | 51.28 | 52.1 |
| VIT_05s0077g00650.t01 | Wine grape | plastid | 57.79 | 52.04 |
| Solyc01g058260.2.1 | Tomato | cytosol, peroxisome, plastid | 48.72 | 51.57 |
| PGSC0003DMT400011757 | Potato | nucleus | 54.44 | 49.29 |
| HORVU0Hr1G035930.1 | Barley | cytosol | 41.81 | 46.19 |
| HORVU0Hr1G029140.2 | Barley | cytosol | 41.81 | 46.19 |
| Zm00001d021105_P001 | Maize | endoplasmic reticulum, plasma membrane | 13.02 | 45.52 |
| GSMUA_Achr8P29920_001 | Banana | cytosol, golgi, plastid | 49.31 | 44.88 |
| TraesCS2A01G096500.1 | Wheat | cytosol, mitochondrion, nucleus, vacuole | 43.39 | 44.18 |
| TraesCS2D01G095000.1 | Wheat | cytosol | 43.79 | 41.97 |
| Zm00001d012429_P002 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 13.02 | 41.51 |
| TraesCS2B01G112000.1 | Wheat | cytosol, plasma membrane, plastid | 43.39 | 41.43 |
| Zm00001d047607_P001 | Maize | cytosol, plasma membrane, plastid | 41.22 | 41.14 |
| Zm00001d028920_P004 | Maize | cytosol, plasma membrane, plastid | 43.59 | 40.93 |
| Os07t0688500-00 | Rice | cytosol | 42.21 | 40.84 |
| Os03t0313300-01 | Rice | mitochondrion | 43.0 | 39.93 |
| Zm00001d022535_P004 | Maize | endoplasmic reticulum, plasma membrane | 41.03 | 38.81 |
| TraesCS4A01G123900.1 | Wheat | nucleus | 40.83 | 38.33 |
| HORVU4Hr1G052840.1 | Barley | plastid | 40.83 | 38.19 |
| HORVU2Hr1G016100.3 | Barley | cytosol | 39.84 | 38.11 |
| TraesCS4B01G180500.1 | Wheat | nucleus | 40.43 | 37.96 |
| TraesCS4D01G182000.1 | Wheat | nucleus | 40.43 | 37.96 |
| KXG36988 | Sorghum | endoplasmic reticulum, plasma membrane | 40.83 | 37.5 |
| OQU92698 | Sorghum | cytosol, plasma membrane, plastid | 42.8 | 35.87 |
| AT4G32850.8 | Thale cress | nucleus | 34.32 | 22.75 |
| AT1G17980.1 | Thale cress | nucleus | 31.16 | 22.16 |
| AT2G25850.2 | Thale cress | nucleus | 33.73 | 21.38 |
Protein Annotations
| Gene3D:1.10.1410.10 | MapMan:16.2.1.1.1 | Gene3D:3.30.460.10 | Gene3D:3.30.70.590 | EntrezGene:819835 | ProteinID:AAG51325.1 |
| ProteinID:AEE74415.1 | EMBL:AK221644 | ArrayExpress:AT3G06560 | EnsemblPlantsGene:AT3G06560 | RefSeq:AT3G06560 | TAIR:AT3G06560 |
| RefSeq:AT3G06560-TAIR-G | EnsemblPlants:AT3G06560.1 | TAIR:AT3G06560.1 | EMBL:AY323907 | Unigene:At.40500 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004652 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006378 | GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016779 | GO:GO:0031123 | GO:GO:0043631 | GO:GO:0046872 |
| RefSeq:NP_187308.3 | InterPro:NuclTrfase_I-like_C | Symbol:PAPS3 | PFAM:PF04928 | PIRSF:PIRSF018425 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009046 | PO:PO:0009073 |
| PO:PO:0020030 | PO:PO:0020031 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR10682 | PANTHER:PTHR10682:SF20 |
| InterPro:PolA_pol_cen_dom | InterPro:PolyA_polymerase | UniProt:Q56XM9 | SUPFAM:SSF55003 | SUPFAM:SSF81301 | SUPFAM:SSF81631 |
| UniParc:UPI00004FF75A | : | : | : | : | : |
Description
PAPS3Nuclear poly(A) polymerase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q56XM9]
Coordinates
chr3:+:2044352..2047209
Molecular Weight (calculated)
57706.8 Da
IEP (calculated)
9.035
GRAVY (calculated)
-0.157
Length
507 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKGGGRNKG FPQDDESSIS LRQLMVNEGL IPSLEDEVKR RGVINQLRKI VVRWVKNVAW QHRLPQNQID ATNATILPYG SYGLGVYGSE SDIDALCIGP
101: FFASIAEDFF ISLRDMLKSR REVSELHCVK DAKVPLIRFK FDGILVDLPY AQLRVLSIPN NVDVLNPFFL RDIDETSWKI LSGVRANKCI LQLVPSLELF
201: QSLLRCVKLW AKRRGVYGNL NGFLGGVHMA ILAAFVCGYQ PNATLSSLLA NFFYTFAHWQ WPTPVVLLED TYPSTGAPPG LMPIQLPCGS HQYCNSTITR
301: STFYKIVAEF LLGHNLTKDY LKLNFSWKDL FELYPYANTY TWFTKIHLSA ANQEDLSDWV GWVKSRFRCL LIKIEEVYGI CDPNPTEYVE TYTKQPNIVF
401: YWGLQLRTIN VSDIESVKID FLKNVNSGSF RGTVGRIQLT LVKASQLPKN GECGSNNRSK KVTKTCWRIR EDKQCNNVPV YSKHLPGYVV GYQKMVNREA
501: DGMEVKC
101: FFASIAEDFF ISLRDMLKSR REVSELHCVK DAKVPLIRFK FDGILVDLPY AQLRVLSIPN NVDVLNPFFL RDIDETSWKI LSGVRANKCI LQLVPSLELF
201: QSLLRCVKLW AKRRGVYGNL NGFLGGVHMA ILAAFVCGYQ PNATLSSLLA NFFYTFAHWQ WPTPVVLLED TYPSTGAPPG LMPIQLPCGS HQYCNSTITR
301: STFYKIVAEF LLGHNLTKDY LKLNFSWKDL FELYPYANTY TWFTKIHLSA ANQEDLSDWV GWVKSRFRCL LIKIEEVYGI CDPNPTEYVE TYTKQPNIVF
401: YWGLQLRTIN VSDIESVKID FLKNVNSGSF RGTVGRIQLT LVKASQLPKN GECGSNNRSK KVTKTCWRIR EDKQCNNVPV YSKHLPGYVV GYQKMVNREA
501: DGMEVKC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.