Factsheet for TraesCS4A01G123900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G061100.3
TraesCS2B01G074500.1
TraesCS2D01G060100.3
TraesCS4A01G258200.3
TraesCS4B01G056200.1
TraesCS4D01G056600.1
TraesCS5A01G203800.1
TraesCS5B01G202500.1
TraesCS5D01G210400.1
TraesCS7A01G461800.1
TraesCS7B01G363200.2
TraesCS7D01G450100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06560.1	TraesCS7A01G461800.1	AT1G30460.1	16897494
AT3G06560.1	TraesCS7B01G363200.2	AT1G30460.1	16897494
AT3G06560.1	TraesCS7D01G450100.1	AT1G30460.1	16897494
AT3G06560.1	TraesCS7A01G461800.1	AT1G30460.1	18479511
AT3G06560.1	TraesCS7B01G363200.2	AT1G30460.1	18479511
AT3G06560.1	TraesCS7D01G450100.1	AT1G30460.1	18479511
AT3G06560.1	TraesCS5A01G203800.1	AT2G01730.1	16897494
AT3G06560.1	TraesCS5B01G202500.1	AT2G01730.1	16897494
AT3G06560.1	TraesCS5D01G210400.1	AT2G01730.1	16897494
AT3G06560.1	TraesCS2A01G061100.3	AT5G51660.1	16897494
AT3G06560.1	TraesCS2B01G074500.1	AT5G51660.1	16897494
AT3G06560.1	TraesCS2D01G060100.3	AT5G51660.1	16897494
AT3G06560.1	TraesCS4A01G258200.3	AT5G58040.1	18479511
AT3G06560.1	TraesCS4B01G056200.1	AT5G58040.1	18479511
AT3G06560.1	TraesCS4D01G056600.1	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G180500.1	Wheat	nucleus	98.33	98.33
TraesCS4D01G182000.1	Wheat	nucleus	97.96	97.96
HORVU4Hr1G052840.1	Barley	plastid	94.44	94.1
Zm00001d047607_P001	Maize	cytosol, plasma membrane, plastid	66.3	70.47
Zm00001d028920_P004	Maize	cytosol, plasma membrane, plastid	69.81	69.81
Zm00001d021105_P001	Maize	endoplasmic reticulum, plasma membrane	18.15	67.59
Os03t0313300-01	Rice	mitochondrion	65.37	64.65
Zm00001d012429_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	18.52	62.89
OQU92698	Sorghum	cytosol, plasma membrane, plastid	69.44	61.98
TraesCS2A01G096500.1	Wheat	cytosol, mitochondrion, nucleus, vacuole	53.7	58.23
GSMUA_Achr8P29920_001	Banana	cytosol, golgi, plastid	46.48	45.06
PGSC0003DMT400074732	Potato	cytosol, peroxisome, plastid	41.11	44.49
Solyc12g099180.1.1	Tomato	cytosol	35.19	43.68
Solyc01g058260.2.1	Tomato	cytosol, peroxisome, plastid	38.7	43.63
VIT_05s0077g00650.t01	Wine grape	plastid	42.78	41.03
AT3G06560.1	Thale cress	nucleus	38.33	40.83
CDY24682	Canola	nucleus	36.67	40.49
CDY05277	Canola	nucleus	37.04	38.99
PGSC0003DMT400011757	Potato	nucleus	40.37	38.93
Bra029588.1-P	Field mustard	nucleus	37.04	38.91
TraesCS2A01G073200.1	Wheat	cytosol	14.44	28.36
TraesCS2A01G342300.1	Wheat	nucleus	25.74	26.43
TraesCS2A01G451700.1	Wheat	nucleus	25.93	25.74
TraesCS2A01G451800.1	Wheat	nucleus	25.93	25.64
TraesCS6A01G191200.1	Wheat	cytosol, mitochondrion	28.33	21.92
TraesCS7A01G357100.1	Wheat	nucleus	28.89	21.37
TraesCS4A01G246800.1	Wheat	nucleus	27.59	20.47

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016740	GO:GO:0016779	GO:GO:0031123	GO:GO:0043631	InterPro:NuclTrfase_I-like_C	PFAM:PF01909
PFAM:PF04926	PFAM:PF04928	PIRSF:PIRSF018425	PANTHER:PTHR10682	PANTHER:PTHR10682:SF28	InterPro:PolA_pol_RNA-bd_dom
InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631
EnsemblPlantsGene:TraesCS4A01G123900	EnsemblPlants:TraesCS4A01G123900.1	TIGR:cd05402	SEG:seg	:	:

Description

No Description!

Coordinates

chr4A:-:156798280..156803374

Molecular Weight (calculated)

60760.2 Da

IEP (calculated)

9.066

GRAVY (calculated)

-0.148

Length

540 amino acids

Sequence
(BLAST)

001: MVLDRPVGRP VFRKPERRTL APPRGTGPPP PPPIPPTPGV YLRGPPPLPP PGAIPPRPIV VCLDLARMKQ MDSSRSSSLM KFLEDTGVSP SEEETRRRER
101: VILELHKIVM DWAKMVAFNQ GGKPWITSGT VLTFGSYDLG AYGPESDIDA VCVGPCIASL QHHFFVVLRQ MLEARPEVSD LHSIESARVP LMRFKFNGVS
201: VDFPYAQLPV INAAEAIHAN DPRLLEKVDE ASWRCLSGVR VNRQIMQLVP NMKKFQLLLR CLKLWARKRG IHCHLVGFFA GIHLAVLGAY VCRRHPNATA
301: NTLLCRFFEI FSHWPWPLPV SLHDQTPLWS PDGCSLMPIV MPCYPPEFCA SNVTKSTFNK IKEELWRGLS LTKDTSSVDV DWNWIFAPFP YAAKYKHFLR
401: IVLSAPTTEE LRDWVGWVKS RFRGLILKLE SLNIGCDPNP SEQVDHTIGE PNAVFLWGLI MYSNTQICTT SLKKDFMRSV TNNIYGKEKC AHSDIELSVV
501: GMPQVPKSMS DHSAYLQKLP NLPPRMLGYP PMRQGCNAVG

Best Arabidopsis Sequence Match ( AT3G06560.1 )
(BLAST)

001: MKKGGGRNKG FPQDDESSIS LRQLMVNEGL IPSLEDEVKR RGVINQLRKI VVRWVKNVAW QHRLPQNQID ATNATILPYG SYGLGVYGSE SDIDALCIGP
101: FFASIAEDFF ISLRDMLKSR REVSELHCVK DAKVPLIRFK FDGILVDLPY AQLRVLSIPN NVDVLNPFFL RDIDETSWKI LSGVRANKCI LQLVPSLELF
201: QSLLRCVKLW AKRRGVYGNL NGFLGGVHMA ILAAFVCGYQ PNATLSSLLA NFFYTFAHWQ WPTPVVLLED TYPSTGAPPG LMPIQLPCGS HQYCNSTITR
301: STFYKIVAEF LLGHNLTKDY LKLNFSWKDL FELYPYANTY TWFTKIHLSA ANQEDLSDWV GWVKSRFRCL LIKIEEVYGI CDPNPTEYVE TYTKQPNIVF
401: YWGLQLRTIN VSDIESVKID FLKNVNSGSF RGTVGRIQLT LVKASQLPKN GECGSNNRSK KVTKTCWRIR EDKQCNNVPV YSKHLPGYVV GYQKMVNREA
501: DGMEVKC

Arabidopsis Description

PAPS3Nuclear poly(A) polymerase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q56XM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.