Factsheet for Zm00001d021105_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, endoplasmic reticulum

Predictor Summary:

extracellular 3
golgi 3
plasma membrane 4
endoplasmic reticulum 4
vacuole 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004153_P002
Zm00001d004154_P002
Zm00001d013380_P001
Zm00001d014378_P001
Zm00001d014379_P001
Zm00001d033843_P007
Zm00001d036594_P001
Zm00001d036595_P001
Zm00001d044213_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06560.1	Zm00001d014378_P001	AT1G30460.1	16897494
AT3G06560.1	Zm00001d014379_P001	AT1G30460.1	16897494
AT3G06560.1	Zm00001d036594_P001	AT1G30460.1	16897494
AT3G06560.1	Zm00001d036595_P001	AT1G30460.1	16897494
AT3G06560.1	Zm00001d014378_P001	AT1G30460.1	18479511
AT3G06560.1	Zm00001d014379_P001	AT1G30460.1	18479511
AT3G06560.1	Zm00001d036594_P001	AT1G30460.1	18479511
AT3G06560.1	Zm00001d036595_P001	AT1G30460.1	18479511
AT3G06560.1	Zm00001d044213_P001	AT2G01730.1	16897494
AT3G06560.1	Zm00001d004153_P002	AT5G51660.1	16897494
AT3G06560.1	Zm00001d004154_P002	AT5G51660.1	16897494
AT3G06560.1	Zm00001d013380_P001	AT5G58040.1	18479511
AT3G06560.1	Zm00001d033843_P007	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012429_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	99.31	90.57
Zm00001d047607_P001	Maize	cytosol, plasma membrane, plastid	88.28	25.2
Zm00001d028920_P004	Maize	cytosol, plasma membrane, plastid	84.83	22.78
OQU92698	Sorghum	cytosol, plasma membrane, plastid	84.83	20.33
TraesCS4B01G180500.1	Wheat	nucleus	67.59	18.15
TraesCS4A01G123900.1	Wheat	nucleus	67.59	18.15
TraesCS4D01G182000.1	Wheat	nucleus	66.9	17.96
HORVU4Hr1G052840.1	Barley	plastid	66.9	17.9
Os03t0313300-01	Rice	mitochondrion	64.14	17.03
Solyc12g099180.1.1	Tomato	cytosol	46.9	15.63
Zm00001d022535_P004	Maize	endoplasmic reticulum, plasma membrane	55.17	14.93
Solyc01g058260.2.1	Tomato	cytosol, peroxisome, plastid	46.21	13.99
PGSC0003DMT400074732	Potato	cytosol, peroxisome, plastid	46.9	13.63
GSMUA_Achr8P29920_001	Banana	cytosol, golgi, plastid	50.34	13.11
CDY24682	Canola	nucleus	44.14	13.09
AT3G06560.1	Thale cress	nucleus	45.52	13.02
CDY05277	Canola	nucleus	44.14	12.48
Bra029588.1-P	Field mustard	nucleus	44.14	12.45
PGSC0003DMT400011757	Potato	nucleus	47.59	12.32
VIT_05s0077g00650.t01	Wine grape	plastid	45.52	11.72
Zm00001d002505_P001	Maize	nucleus	35.86	9.42
Zm00001d053559_P007	Maize	mitochondrion	35.17	7.45
Zm00001d036977_P001	Maize	nucleus	34.48	7.12
Zm00001d046255_P035	Maize	nucleus	34.48	6.06
Zm00001d013599_P016	Maize	nucleus	31.03	6.0
Zm00001d033448_P004	Maize	nucleus	30.34	5.91
Zm00001d044377_P001	Maize	cytosol	4.14	3.87
Zm00001d040140_P001	Maize	cytosol	4.14	3.31
Zm00001d016073_P001	Maize	cytosol	4.14	3.16
Zm00001d031424_P001	Maize	cytosol	3.45	2.92

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	UniProt:A0A1D6I8C2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004652
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0043631
ProteinID:ONM56293.1	PFAM:PF04928	PANTHER:PTHR10682	PANTHER:PTHR10682:SF28	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase
SUPFAM:SSF81631	TMHMM:TMhelix	UniParc:UPI0008437CDE	EnsemblPlantsGene:Zm00001d021105	EnsemblPlants:Zm00001d021105_P001	EnsemblPlants:Zm00001d021105_T001
SEG:seg	:	:	:	:	:

Description

Nuclear poly(A) polymerase 3

Coordinates

chr7:+:142854386..142854894

Molecular Weight (calculated)

16267.3 Da

IEP (calculated)

8.695

GRAVY (calculated)

0.471

Length

145 amino acids

Sequence
(BLAST)

001: MTSSFLATTL PILISPFYGV SMQKFQYLLR CLKLWARKRG LDCHLLGFFA GIHLAILAAY VCRRHPNASI NTLLSLFFDI FVHWLWPLPV SLLDPPVLCG
101: GPDGCSLMPI MLPCIPPEFC SSSTTESTFS KIKEELRRGY ALSKV

Best Arabidopsis Sequence Match ( AT3G06560.1 )
(BLAST)

001: MKKGGGRNKG FPQDDESSIS LRQLMVNEGL IPSLEDEVKR RGVINQLRKI VVRWVKNVAW QHRLPQNQID ATNATILPYG SYGLGVYGSE SDIDALCIGP
101: FFASIAEDFF ISLRDMLKSR REVSELHCVK DAKVPLIRFK FDGILVDLPY AQLRVLSIPN NVDVLNPFFL RDIDETSWKI LSGVRANKCI LQLVPSLELF
201: QSLLRCVKLW AKRRGVYGNL NGFLGGVHMA ILAAFVCGYQ PNATLSSLLA NFFYTFAHWQ WPTPVVLLED TYPSTGAPPG LMPIQLPCGS HQYCNSTITR
301: STFYKIVAEF LLGHNLTKDY LKLNFSWKDL FELYPYANTY TWFTKIHLSA ANQEDLSDWV GWVKSRFRCL LIKIEEVYGI CDPNPTEYVE TYTKQPNIVF
401: YWGLQLRTIN VSDIESVKID FLKNVNSGSF RGTVGRIQLT LVKASQLPKN GECGSNNRSK KVTKTCWRIR EDKQCNNVPV YSKHLPGYVV GYQKMVNREA
501: DGMEVKC

Arabidopsis Description

PAPS3Nuclear poly(A) polymerase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q56XM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.