Factsheet for Zm00001d013599_P016

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93704	Sorghum	cytosol	94.0	94.0
Zm00001d031424_P001	Maize	cytosol	21.2	92.98
Zm00001d033448_P004	Maize	nucleus	91.73	92.35
Zm00001d044377_P001	Maize	cytosol	19.07	92.26
Zm00001d040140_P001	Maize	cytosol	21.87	90.61
Zm00001d016073_P001	Maize	cytosol	22.13	87.37
TraesCS4D01G067100.1	Wheat	nucleus	71.6	73.66
TraesCS4B01G068100.1	Wheat	nucleus	71.47	73.53
TraesCS4A01G246800.1	Wheat	nucleus	71.33	73.49
Os06t0319600-01	Rice	cytosol	12.4	72.09
HORVU4Hr1G011370.8	Barley	nucleus	72.13	71.56
CDY58017	Canola	cytosol, nucleus, plasma membrane	25.33	64.63
VIT_17s0000g03120.t01	Wine grape	cytosol, nucleus, plastid	49.73	57.3
GSMUA_AchrUn_...	Banana	nucleus	54.13	54.64
Solyc05g008630.2.1	Tomato	nucleus	47.2	51.91
CDY21725	Canola	nucleus	49.07	51.76
CDX81855	Canola	nucleus	48.93	51.69
AT1G17980.1	Thale cress	nucleus	48.8	51.33
CDX96740	Canola	nucleus	48.53	51.05
CDX83877	Canola	nucleus	48.4	50.98
CDY17685	Canola	nucleus	45.87	50.89
Bra024894.1-P	Field mustard	nucleus	45.33	50.6
KRH39125	Soybean	nucleus	50.93	50.46
Bra016573.1-P	Field mustard	nucleus	46.53	50.43
Bra031010.1-P	Field mustard	nucleus	46.27	50.36
VIT_01s0011g04320.t01	Wine grape	nucleus	47.73	50.0
KRH48590	Soybean	nucleus	50.4	49.93
CDX77811	Canola	nucleus	45.87	49.64
PGSC0003DMT400078394	Potato	nucleus	45.73	48.38
Zm00001d036977_P001	Maize	nucleus	42.8	45.73
Zm00001d053559_P007	Maize	mitochondrion	39.73	43.5
KRH60473	Soybean	cytosol	34.27	43.12
Zm00001d002505_P001	Maize	nucleus	31.6	42.93
Zm00001d046255_P035	Maize	nucleus	42.8	38.91
Zm00001d021105_P001	Maize	endoplasmic reticulum, plasma membrane	6.0	31.03
Zm00001d047607_P001	Maize	cytosol, plasma membrane, plastid	19.6	28.94
Zm00001d028920_P004	Maize	cytosol, plasma membrane, plastid	20.4	28.33
Zm00001d012429_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	6.0	28.3
Zm00001d022535_P004	Maize	endoplasmic reticulum, plasma membrane	19.2	26.87

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	UniProt:A0A1D6GKT2	ProteinID:AQK63929.1
ProteinID:AQK63933.1	ProteinID:AQK63936.1	ProteinID:AQK63942.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740
GO:GO:0016779	GO:GO:0031123	GO:GO:0043631	InterPro:NuclTrfase_I-like_C	PFAM:PF01909	PFAM:PF04926
PFAM:PF04928	PANTHER:PTHR10682	PANTHER:PTHR10682:SF22	InterPro:PolA_pol_RNA-bd_dom	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase
InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631	UniParc:UPI0008451A6D	EnsemblPlantsGene:Zm00001d013599
EnsemblPlants:Zm00001d013599_P016	EnsemblPlants:Zm00001d013599_T016	SEG:seg	:	:	:

Description

Nuclear poly(A) polymerase 1

Coordinates

chr5:-:15110521..15119652

Molecular Weight (calculated)

84422.9 Da

IEP (calculated)

6.590

GRAVY (calculated)

-0.465

Length

750 amino acids

Sequence
(BLAST)

001: MSKAKNNNGY LGVTEPISLS GPTEKDLMQT AEVEKYLSDA GLYESQDEAV LREEVLGKLD QTVKAWIRKA TRISGYGEQF VHEANAKIFT FGSYRLGVHG
101: PGADIDTLCV GPRHATRNEF FFRWLHDMLA EMPEVSELHP VPDAHVPVLG FKINGVSIDL LYANLAHAVI PEDLDLSQDN ILHNVDEQTV RSLNGCRVTD
201: QILRLVPNIL SFRTTLRFIR YWGKCRGVYS NVMGFLGGIN WAILVGRICQ LYPNASPSML VSRFFRVYSK WKWPNPVMLC HIEEGYLGLP VWDPRRNYRD
301: RGHQMPIITP AYPCMNSSYN VSVSTRYVMI QEFTRAFEIC QAIDEGKADW DALFEPYPFF ESYKNYLEVN ITARNEDDLR NWKGWVESRL RTLVLKIERY
401: SHEMILAHPY PKDFSDKSRP LHCFYFMGLW RKQTTQAQEA EQFDIRGIVN EFRNTICAYQ HWKEGMDIEV SHVKRKEIPL FVFPGGVRPS RSSRTAHKKS
501: RTIPTCDVSA DDQVGNLLGV ASCSDAQPVP CKGSYTKQPD PNCAGGFQLP GSTSVLPPSL PNEVVLNGSA NFHEESVERE HPEHYQESKF ATVQNAVCHV
601: AKQPNSLLPN SNNGWQLYGS DSSLNNSQRE CSGSAANNLL NLSPAIPATP DELDELVSSN QIKANQEDVN AERRPSLEIG SENNLEQICS LRPQDSNDNL
701: KRKANQELEP LELAAPSTVA AAQSTGTAPR KPLRLRLTTL GKPKPAEGTT

Best Arabidopsis Sequence Match ( AT1G17980.1 )
(BLAST)

001: MASVQQNGQR FGVSEPISMG GPTEFDVIKT RELEKHLQDV GLYESKEEAV RREEVLGILD QIVKTWIKTI SRAKGLNDQL LHEANAKIFT FGSYRLGVHG
101: PGADIDTLCV GPRHATREGD FFGELQRMLS EMPEVTELHP VPDAHVPLMG FKLNGVSIDL LYAQLPLWVI PEDLDLSQDS ILQNADEQTV RSLNGCRVTD
201: QILRLVPNIQ NFRTTLRCMR FWAKRRGVYS NVSGFLGGIN WALLVARICQ LYPNALPNIL VSRFFRVFYQ WNWPNAIFLC SPDEGSLGLQ VWDPRINPKD
301: RLHIMPIITP AYPCMNSSYN VSESTLRIMK GEFQRGNEIC EAMESNKADW DTLFEPFAFF EAYKNYLQID ISAANVDDLR KWKGWVESRL RQLTLKIERH
401: FKMLHCHPHP HDFQDTSRPL HCSYFMGLQR KQGVPAAEGE QFDIRRTVEE FKHTVNAYTL WIPGMEISVG HIKRRSLPNF VFPGGVRPSH TSKGTWDSNR
501: RSEHRNSSTS SAPAATTTTT EMSSESKAGS NSPVDGKKRK WGDSETLTDQ PRNSKHIAVS VPVENCEGGS PNPSVGSICS SPMKDYCTNG KSEPISKDPP
601: ENVVAFSKDP PESLPIEKIA TPQAHETEEL EESFDFGNQV IEQISHKVAV LSATATIPPF EATSNGSPFP YEAVEELEVL PTRQPDAAHR PSVQQRKPII
701: KLSFTSLGKT NGK

Arabidopsis Description

PAPS1Nuclear poly(A) polymerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.