CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96740	Canola	nucleus	94.52	94.39
CDY21725	Canola	nucleus	90.73	90.86
CDX81855	Canola	nucleus	90.59	90.85
AT1G17980.1	Thale cress	nucleus	84.55	84.43
CDY58017	Canola	cytosol, nucleus, plasma membrane	32.72	79.25
CDY17685	Canola	nucleus	71.63	75.44
CDX77811	Canola	nucleus	73.31	75.32
VIT_17s0000g03120.t01	Wine grape	cytosol, nucleus, plastid	61.66	67.43
Zm00001d031424_P001	Maize	cytosol	15.45	64.33
Zm00001d044377_P001	Maize	cytosol	13.48	61.94
CDY52248	Canola	cytosol, nucleus, plastid	7.3	61.9
CDY65137	Canola	cytosol, nucleus, plastid	7.3	61.9
Zm00001d040140_P001	Maize	cytosol	15.73	61.88
KRH39125	Soybean	nucleus	65.03	61.16
KRH48590	Soybean	nucleus	63.2	59.45
Zm00001d016073_P001	Maize	cytosol	15.73	58.95
Os06t0319600-01	Rice	cytosol	10.67	58.91
GSMUA_AchrUn_...	Banana	nucleus	60.25	57.74
Solyc05g008630.2.1	Tomato	nucleus	54.78	57.18
KRH60473	Soybean	cytosol	47.61	56.88
PGSC0003DMT400078394	Potato	nucleus	54.63	54.87
CDY69371	Canola	cytosol	6.18	52.38
TraesCS4A01G246800.1	Wheat	nucleus	52.39	51.24
TraesCS4D01G067100.1	Wheat	nucleus	52.25	51.03
TraesCS4B01G068100.1	Wheat	nucleus	52.11	50.89
HORVU4Hr1G011370.8	Barley	nucleus	52.25	49.21
Zm00001d033448_P004	Maize	nucleus	50.98	48.72
EER93704	Sorghum	cytosol	51.26	48.67
Zm00001d013599_P016	Maize	nucleus	50.98	48.4
CDX68897	Canola	nucleus	48.17	47.31
CDX75292	Canola	nucleus	48.31	47.19
CDX77017	Canola	nucleus	48.46	45.94
CDY35331	Canola	nucleus	48.31	45.14
CDY24682	Canola	nucleus	23.31	33.95
CDY05277	Canola	nucleus	23.46	32.55

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	GO:A0A078D414	EnsemblPlants:CDX83877
ProteinID:CDX83877	ProteinID:CDX83877.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004652	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779
GO:GO:0031123	GO:GO:0043631	EnsemblPlantsGene:GSBRNA2T00139648001	InterPro:NuclTrfase_I-like_C	PFAM:PF01909	PFAM:PF04926
PFAM:PF04928	PANTHER:PTHR10682	PANTHER:PTHR10682:SF22	InterPro:PolA_pol_RNA-bd_dom	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase
InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631	TMHMM:TMhelix	UniParc:UPI0004EF0C85
SEG:seg	:	:	:	:	:

Description

BnaC08g17680D

Coordinates

chrLK031834:+:937438..940818

Molecular Weight (calculated)

79782.8 Da

IEP (calculated)

6.792

GRAVY (calculated)

-0.453

Length

712 amino acids

Sequence
(BLAST)

001: MANVQQRYGI TEPISLGGPT ELDVVKTREL EKYLQDVGLY EGKEEAVRRE EVLGRLDQIV KIWIKTISRA KGLNDQLLHE ANAEIFTFGS YRLGVHGPGA
101: DIDTLCVGPR HATREGDFFG ELQRMLSEMP EVTELHPVPD AHVPLMGFKL NGISIDLLYA QLPLWVIPKD LDISQDSILQ NADEQTVRSL NGCRVTDQIL
201: RLVPNIENFR TTLRCMRFWA KRRGVYSNVS GFLGGINWAL LVARICQLYP NALPNMLASR FFRVYTQWRW PNPVLLCSID GGSFGLQVWD PRRNPKDRLH
301: MMPIITPAYP CMNSSYNVSA STLRIMTGEF QRGKYICEAM EANKADWDTL FEPFAFFEAY KNYLQIDISA ANVDDLRKWK GWVESRLRQL TLKIERHTYD
401: MLQCHPHTHD YQDASRPLHC SYFMGLQRKH GVPAAEGEQF DIRRTVEEFK HTVNGYMLWI PGMEIGVSHI KRRSIPSFVF PGGVRPSHAS KGTWDSKRRS
501: ENRIASTASA ATTNTNEASS ESKGGSSSLG DGKKRKRGDD ETLTDQLRNS KRVGVAVPVE NGEGGSPDPS VGSVCSSPLK DCLTDAKSDP ISKDPPENVV
601: LFSKDTPESH PLEKIATLQA QSQETEELED SFDFGNQVIE QISNKDTIVA ASATTPPFEA TTSNGSPFSN GAVEELEVLP MGHPEVTHRA LVQQRKPIIK
701: LNFTSLGKTN GK

Best Arabidopsis Sequence Match ( AT1G17980.1 )
(BLAST)

001: MASVQQNGQR FGVSEPISMG GPTEFDVIKT RELEKHLQDV GLYESKEEAV RREEVLGILD QIVKTWIKTI SRAKGLNDQL LHEANAKIFT FGSYRLGVHG
101: PGADIDTLCV GPRHATREGD FFGELQRMLS EMPEVTELHP VPDAHVPLMG FKLNGVSIDL LYAQLPLWVI PEDLDLSQDS ILQNADEQTV RSLNGCRVTD
201: QILRLVPNIQ NFRTTLRCMR FWAKRRGVYS NVSGFLGGIN WALLVARICQ LYPNALPNIL VSRFFRVFYQ WNWPNAIFLC SPDEGSLGLQ VWDPRINPKD
301: RLHIMPIITP AYPCMNSSYN VSESTLRIMK GEFQRGNEIC EAMESNKADW DTLFEPFAFF EAYKNYLQID ISAANVDDLR KWKGWVESRL RQLTLKIERH
401: FKMLHCHPHP HDFQDTSRPL HCSYFMGLQR KQGVPAAEGE QFDIRRTVEE FKHTVNAYTL WIPGMEISVG HIKRRSLPNF VFPGGVRPSH TSKGTWDSNR
501: RSEHRNSSTS SAPAATTTTT EMSSESKAGS NSPVDGKKRK WGDSETLTDQ PRNSKHIAVS VPVENCEGGS PNPSVGSICS SPMKDYCTNG KSEPISKDPP
601: ENVVAFSKDP PESLPIEKIA TPQAHETEEL EESFDFGNQV IEQISHKVAV LSATATIPPF EATSNGSPFP YEAVEELEVL PTRQPDAAHR PSVQQRKPII
701: KLSFTSLGKT NGK

Arabidopsis Description

PAPS1Nuclear poly(A) polymerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.