CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013599_P016	Maize	nucleus	94.0	94.0
Zm00001d033448_P004	Maize	nucleus	91.87	92.48
Zm00001d031424_P001	Maize	cytosol	21.07	92.4
Zm00001d044377_P001	Maize	cytosol	18.93	91.61
Zm00001d040140_P001	Maize	cytosol	21.87	90.61
Zm00001d016073_P001	Maize	cytosol	22.13	87.37
TraesCS4D01G067100.1	Wheat	nucleus	72.13	74.21
TraesCS4B01G068100.1	Wheat	nucleus	71.73	73.8
TraesCS4A01G246800.1	Wheat	nucleus	71.6	73.76
HORVU4Hr1G011370.8	Barley	nucleus	72.67	72.09
Os06t0319600-01	Rice	cytosol	12.27	71.32
CDY58017	Canola	cytosol, nucleus, plasma membrane	25.33	64.63
VIT_17s0000g03120.t01	Wine grape	cytosol, nucleus, plastid	49.47	56.99
GSMUA_AchrUn_...	Banana	nucleus	55.33	55.85
Solyc05g008630.2.1	Tomato	nucleus	47.6	52.35
CDY21725	Canola	nucleus	49.07	51.76
CDX81855	Canola	nucleus	48.93	51.69
CDX96740	Canola	nucleus	48.8	51.33
CDX83877	Canola	nucleus	48.67	51.26
AT1G17980.1	Thale cress	nucleus	48.53	51.05
KRH39125	Soybean	nucleus	51.33	50.86
CDY17685	Canola	nucleus	45.6	50.59
Bra016573.1-P	Field mustard	nucleus	46.67	50.58
KRH48590	Soybean	nucleus	50.93	50.46
Bra031010.1-P	Field mustard	nucleus	46.27	50.36
Bra024894.1-P	Field mustard	nucleus	45.07	50.3
VIT_01s0011g04320.t01	Wine grape	nucleus	47.33	49.58
CDX77811	Canola	nucleus	45.6	49.35
PGSC0003DMT400078394	Potato	nucleus	46.27	48.94
OQU76574	Sorghum	nucleus	42.93	46.33
KXG27007	Sorghum	nucleus	32.67	44.87
KXG29853	Sorghum	mitochondrion	40.53	43.55
KRH60473	Soybean	cytosol	34.27	43.12
KXG36988	Sorghum	endoplasmic reticulum, plasma membrane	19.2	26.09
OQU92698	Sorghum	cytosol, plasma membrane, plastid	19.73	24.46

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	EntrezGene:8056755	UniProt:C5WQD3
EnsemblPlants:EER93704	ProteinID:EER93704	ProteinID:EER93704.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006378	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008285	GO:GO:0009653	GO:GO:0009791	GO:GO:0009908
GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0031123	GO:GO:0043631	GO:GO:0045824
GO:GO:0048366	GO:GO:0048451	InterPro:NuclTrfase_I-like_C	PFAM:PF01909	PFAM:PF04926	PFAM:PF04928
PANTHER:PTHR10682	PANTHER:PTHR10682:SF22	InterPro:PolA_pol_RNA-bd_dom	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom
EnsemblPlantsGene:SORBI_3001G145000	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631	unigene:Sbi.12003	TMHMM:TMhelix
UniParc:UPI0001A82A94	RefSeq:XP_002466706.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:11611525..11616674

Molecular Weight (calculated)

84382.9 Da

IEP (calculated)

7.047

GRAVY (calculated)

-0.478

Length

750 amino acids

Sequence
(BLAST)

001: MSKAKTNNGY LGVTEPISLS GPTDKDLMQT TEVEKYLSDA GLYESQDEAV LREEVLGKLD QTVKAWIKKA TRISGYGEQF VHEANAKIFT FGSYRLGVHG
101: PGADIDTLCV GPRHATRNEY FFRWLHDMLA EMPEVSELHP VPDAHVPVLG FKINGVSIDL LYANLAHAVI PEDLDLSQDS ILNNVDEQTV RSLNGCRVTD
201: QILRLVPNIL SFRTTLRFIR YWGKRRGVYS NVMGFLGGIN WAILVGRICQ LYPNASPSML ISRFFRVYSK WKWPNPVMLC HIEEGYLGLP VWDPRRNYRD
301: RGHQMPIITP AYPCMNSSYN VSVSTRYVMT QEFTRAFEIC QAIDEGKADW DALFEPYPFF ESYKNYLEVN ITARNEDELR SWKGWVESRL RTLVLKIERY
401: SHEMILAHPY PKDFSDKSRP LHCFYFMGLW RKQTTQTQEA EQFDIRGIVN EFKNTICAYQ QWKEGMDIEV SHVKRKEIPL FVFPGGVRPS RSSRTAHKNS
501: RTVPTCDVSA DDQVGNLLGV ASCSDAQPVS CKGSYMKQPE PDCAGGFQLP GSTSVLPPSL PNKVALNGSA NFHAESVEHE HPEHYQESKF ATVQNAVRNV
601: VKQPNSLLPN SNNAWQLYGS DSSLNNSQRE CAGSAANNLL NLSPAILATP DELDELVSHH QVKVNQKDVN ADRRPSLEIG SENNLEQVSS LRPQDSNNNL
701: KRKANQELEP LELAAPSTGA APQSTASAPR KPLRLRLTTL GKPKPAEGTS

Best Arabidopsis Sequence Match ( AT1G17980.1 )
(BLAST)

001: MASVQQNGQR FGVSEPISMG GPTEFDVIKT RELEKHLQDV GLYESKEEAV RREEVLGILD QIVKTWIKTI SRAKGLNDQL LHEANAKIFT FGSYRLGVHG
101: PGADIDTLCV GPRHATREGD FFGELQRMLS EMPEVTELHP VPDAHVPLMG FKLNGVSIDL LYAQLPLWVI PEDLDLSQDS ILQNADEQTV RSLNGCRVTD
201: QILRLVPNIQ NFRTTLRCMR FWAKRRGVYS NVSGFLGGIN WALLVARICQ LYPNALPNIL VSRFFRVFYQ WNWPNAIFLC SPDEGSLGLQ VWDPRINPKD
301: RLHIMPIITP AYPCMNSSYN VSESTLRIMK GEFQRGNEIC EAMESNKADW DTLFEPFAFF EAYKNYLQID ISAANVDDLR KWKGWVESRL RQLTLKIERH
401: FKMLHCHPHP HDFQDTSRPL HCSYFMGLQR KQGVPAAEGE QFDIRRTVEE FKHTVNAYTL WIPGMEISVG HIKRRSLPNF VFPGGVRPSH TSKGTWDSNR
501: RSEHRNSSTS SAPAATTTTT EMSSESKAGS NSPVDGKKRK WGDSETLTDQ PRNSKHIAVS VPVENCEGGS PNPSVGSICS SPMKDYCTNG KSEPISKDPP
601: ENVVAFSKDP PESLPIEKIA TPQAHETEEL EESFDFGNQV IEQISHKVAV LSATATIPPF EATSNGSPFP YEAVEELEVL PTRQPDAAHR PSVQQRKPII
701: KLSFTSLGKT NGK

Arabidopsis Description

PAPS1Nuclear poly(A) polymerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.