CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053559_P007	Maize	mitochondrion	91.69	93.43
Os02t0227400-01	Rice	extracellular	65.62	75.08
HORVU6Hr1G040920.3	Barley	mitochondrion, nucleus	71.63	73.21
TraesCS6D01G174400.1	Wheat	cytosol, mitochondrion	73.35	73.04
TraesCS6A01G191200.1	Wheat	cytosol, mitochondrion	71.35	71.35
TraesCS6B01G219800.3	Wheat	cytosol, mitochondrion	71.06	70.76
Bra011388.1-P	Field mustard	nucleus	39.11	65.31
OQU76574	Sorghum	nucleus	62.18	62.45
PGSC0003DMT400075574	Potato	nucleus	53.44	61.55
Solyc12g095890.1.1	Tomato	nucleus	53.15	61.12
GSMUA_Achr10P...	Banana	nucleus	57.74	57.99
GSMUA_Achr6P14860_001	Banana	nucleus	54.73	56.68
VIT_11s0016g03040.t01	Wine grape	nucleus	46.56	54.35
CDX68897	Canola	nucleus	55.44	53.38
CDX75292	Canola	nucleus	55.59	53.22
KRH62113	Soybean	nucleus	55.44	53.16
KRH52804	Soybean	nucleus	55.16	52.6
KXG27007	Sorghum	nucleus	40.83	52.2
CDX77017	Canola	nucleus	54.44	50.6
CDY35331	Canola	nucleus	54.73	50.13
AT4G32850.8	Thale cress	nucleus	54.58	49.8
Bra034276.1-P	Field mustard	cytosol	54.58	49.42
Solyc08g066200.2.1	Tomato	nucleus	55.44	49.17
GSMUA_Achr9P16270_001	Banana	nucleus	55.44	48.38
AT2G25850.2	Thale cress	nucleus	54.15	47.25
EER93704	Sorghum	cytosol	43.55	40.53
KXG36988	Sorghum	endoplasmic reticulum, plasma membrane	22.35	28.26
OQU92698	Sorghum	cytosol, plasma membrane, plastid	23.78	27.44

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	UniProt:A0A194YNS9	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0031123	GO:GO:0043631	ProteinID:KXG29852.1
EnsemblPlants:KXG29853	ProteinID:KXG29853	ProteinID:KXG29853.1	InterPro:NuclTrfase_I-like_C	PFAM:PF01909	PFAM:PF04926
PFAM:PF04928	PANTHER:PTHR10682	PANTHER:PTHR10682:SF27	InterPro:PolA_pol_RNA-bd_dom	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase
InterPro:Polymerase_NTP_transf_dom	EnsemblPlantsGene:SORBI_3004G099800	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631	UniParc:UPI0007F23313

Description

hypothetical protein

Coordinates

chr4:-:8924916..8931165

Molecular Weight (calculated)

77884.4 Da

IEP (calculated)

5.265

GRAVY (calculated)

-0.275

Length

698 amino acids

Sequence
(BLAST)

001: MAGSVGKGRA ALRSSPKRYS GTDPPLSLAG PTLADLQRTA ELEKFLVEAG LYEGKEESAK REDVLCEIGQ IVKEWVKQLT SKKGYADQLV EQANAVLFTF
101: GSYRLGVHGP EADIDTLCVG PSYVNREEDF FVTLHGILAE KEEVTELQPV PDAHVPVLKF KFRGISIDLL YASLSLSVIP ADFDISQGSV LCDVDEATVR
201: SLNGCRVADQ ILRLVPNVEN FRTTLRCLKY WAKRRGVYSN ITGFLGGVNW ALLVARVCQL YPNAVPSMLV SRFFRVFTQW QWPNPVMLCA IENNDLGFSI
301: WDPRKNPRDR NHLMPIITPA YPCMNSSYNV SSSTLRVIME QFQFGNKICQ EIELNKANWN ALFEPFHFFE AYRKFLVVDI VAENDDDLRL WKGWIESRLR
401: QLTLKIDRDT KGILQCHPYP CEYSDPTIEC AHCAFYMGLS RKEGSKKRGQ QFDIRGTVDE FMREIGMYSL WMPGMDLAVT HVQREQVPSY VFEQGYKKPC
501: PTMHANQQEQ SDGDVTLSPY LDSQLKRKYD SDGDGHVELH KSVKWASVSP PGVGTPPHGN SVSNVVCDSP VKFVSSVVCS RAQTSPSHDD INLEQAQLTT
601: SPYGSEDTSA SGTSFAAVGA VVLADESSKL GNLTSDLELN TIQRMPLHTS SECVAQKDET KFEEIRSLAS SNCAEFVESS VLAIAEKVHL DIGGDEVN

Best Arabidopsis Sequence Match ( AT2G25850.3 )
(BLAST)

001: MVSTQQRTDD DSSQPVKASL KSYGITEPLS IAGPSAADVK RNLELEKFLV DEGLYESKEE TMRREEVVVR IDQIVKHWVK QLTRQRGYTD QMVEDANAVI
101: FTFGSYRLGV HGPMADIDTL CVGPSYVNRE EDFFIFFRDI LAEMEEVTEL QPVTDAHVPV MKFKFQGISI DLLYASISLL VIPQDLDISN SSVLCDVDEQ
201: TVRSLNGCRV ADQILKLVPN SEHFRTTLRC LKYWAKKRGV YSNVTGFLGG VNWALLVARL CQFYPNAIPS MLVSRFFRVY TQWRWPNPVM LCAIEEDDLS
301: FPVWDPRKNH RDRYHLMPII TPAYPCMNSS YNVSQSTLRV MTEQFQFGNT ICQEIELNKQ HWSSLFQQYM FFEAYKNYLQ VDVLAADAED LLAWKGWVES
401: RFRQLTLKIE RDTNGMLMCH PQPNEYVDTS KQFRHCAFFM GLQRADGFGG QECQQFDIRG TVDEFRQEVN MYMFWRPGMD VHVSHVRRRQ LPSFVFPNGY
501: KRSRQSRHQS QQCREPGDEG VGSLSDSVER YAKRKNDDEI MNSRPEKREK RASCSLHTLD AASPDSSGIT TSGTPQIGIV PGPRAECLVT GDLVCNVTSL
601: PNVEVEAEKF ISKITELRKF SQYEHTSGSE QILEVDSRAL VQSYHDLAEP VAKHVRPDLS ALLACEGGQN KEIGHDMGSE SINDTDTQHL PRRLNVNEDV
701: DEVEREAKLG EIAGGVLWNG HCGRNLDHEG FVTPANLDSA VENRNLHSDG LFKSGLPEEL QSNSLLSGTG KLDDGASRRL SLKSVA

Arabidopsis Description

PAPS2PAPS2 [Source:UniProtKB/TrEMBL;Acc:A0A178VXR1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.