Factsheet for HORVU6Hr1G040920.3

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G174400.1	Wheat	cytosol, mitochondrion	94.88	92.44
TraesCS6A01G191200.1	Wheat	cytosol, mitochondrion	92.83	90.83
TraesCS6B01G219800.3	Wheat	cytosol, mitochondrion	92.24	89.87
Os02t0227400-01	Rice	extracellular	67.5	75.57
Zm00001d053559_P007	Maize	mitochondrion	71.89	71.68
KXG29853	Sorghum	mitochondrion	73.21	71.63
Bra011388.1-P	Field mustard	nucleus	37.77	61.72
PGSC0003DMT400075574	Potato	nucleus	52.27	58.91
Solyc12g095890.1.1	Tomato	nucleus	52.27	58.81
GSMUA_Achr10P...	Banana	nucleus	56.95	55.97
HORVU7Hr1G088370.13	Barley	nucleus	59.0	55.51
GSMUA_Achr6P14860_001	Banana	nucleus	53.15	53.86
VIT_11s0016g03040.t01	Wine grape	nucleus	46.27	52.84
KRH62113	Soybean	nucleus	55.05	51.65
HORVU2Hr1G079870.2	Barley	nucleus	40.7	51.58
KRH52804	Soybean	nucleus	54.61	50.96
CDX68897	Canola	nucleus	53.0	49.93
CDX75292	Canola	nucleus	53.0	49.66
HORVU4Hr1G013750.2	Barley	nucleus	39.68	48.74
CDX77017	Canola	nucleus	53.0	48.2
CDY35331	Canola	nucleus	53.29	47.77
AT4G32850.8	Thale cress	nucleus	53.15	47.45
Bra034276.1-P	Field mustard	cytosol	53.29	47.21
Solyc08g066200.2.1	Tomato	nucleus	54.17	47.01
GSMUA_Achr9P16270_001	Banana	nucleus	54.61	46.62
AT2G25850.2	Thale cress	nucleus	52.27	44.62
HORVU4Hr1G011370.8	Barley	nucleus	42.9	38.76
HORVU0Hr1G035930.1	Barley	cytosol	21.23	31.59
HORVU0Hr1G029140.2	Barley	cytosol	21.23	31.59
HORVU4Hr1G052840.1	Barley	plastid	22.11	27.86
HORVU2Hr1G016100.3	Barley	cytosol	20.06	25.85
HORVU2Hr1G105500.3	Barley	cytosol	20.79	25.63

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	UniProt:A0A287U116	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0031123
GO:GO:0043631	GO:GO:0046872	EnsemblPlantsGene:HORVU6Hr1G040920	EnsemblPlants:HORVU6Hr1G040920.3	InterPro:NuclTrfase_I-like_C	PFAM:PF01909
PFAM:PF04926	PFAM:PF04928	PIRSF:PIRSF018425	PANTHER:PTHR10682	PANTHER:PTHR10682:SF27	InterPro:PolA_pol_RNA-bd_dom
InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631
UniParc:UPI000B486142	:	:	:	:	:

Description

No Description!

Coordinates

chrchr6H:-:222145614..222158400

Molecular Weight (calculated)

76474.5 Da

IEP (calculated)

6.104

GRAVY (calculated)

-0.271

Length

683 amino acids

Sequence
(BLAST)

001: MAGSVGTGRV APRSSPKRYN GMDPPLSLTR PTMFDLQKTA ELEKFLVEAG LYESKEQSAK REEVLREIDV IVKGWVKQLT SQKGYSEQMI EKANVVLFTF
101: GSYRLGVHGP GADIDILCVG PSYVNREEDF FVTLHGILTQ LEEVTEIQPV PDAHVPLMKF KFHGMAIDLL YASVSLAVIP PDFDISEGSV LSGVDESTVR
201: SLNGCRVADQ ILRLVPNVEN FRTTLRCLKY WAERRGVYSN VTGFLGGVNW AILVARICQL YPNAVPSMLV SRFFRVFTQW QWPNPVMLCA IENDDLGFSV
301: WDPRKNPRDR SHVMPIITPG YPCMNSSYNV SSSTLRVIME QFKLGNKICQ EIDLNKASWT ALFEPFNFFE AYTKYLVVDI VADNDDDLRL WKGWVESRLR
401: QLTLKIERDT NGMLQCHPYP CDYANPRVQC AHCSFYMGLS RKEGMKIHGQ KFDIRGTVDD FMHEIGMYTL WKSGMDLAVT HVRKKQIPYY VFEQGYKKPC
501: PPVHANQQEQ SDRQCDFDGA GHIESCKSVK RSSVSPGYEE SQPEYGSIVS KIVCENTVKL VSSALYNGVQ NRLSHGDVNL ESANCPSSPH GSEESAASGT
601: CCAAVETVHM SDETVGPESS MTCVINGTVQ TMAVHTPLKC VAEKDEPKFE GIGSLPNSNS AKFMEQTEML TGNVLGENMQ LCK

Best Arabidopsis Sequence Match ( AT4G32850.1 )
(BLAST)

001: MMVGTQNLGG SLPPLNSPKS YGITKPLSLA GPSSADIKRN VELEKYLVDE GLYESKDDTM RREEVLGRID QIVKHWVKQL TQQRGYTDQM VEDANAVIFT
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQSNSLVSGM EKSEDRARSE SFQKSQIRLL T

Arabidopsis Description

nPAPnuclear poly(a) polymerase [Source:TAIR;Acc:AT4G32850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.