Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75292 | Canola | nucleus | 84.18 | 88.34 |
| CDX68897 | Canola | nucleus | 83.4 | 88.0 |
| Bra011388.1-P | Field mustard | nucleus | 46.01 | 84.21 |
| AT2G25850.2 | Thale cress | nucleus | 73.33 | 70.12 |
| Solyc12g095890.1.1 | Tomato | nucleus | 53.33 | 67.22 |
| PGSC0003DMT400075574 | Potato | nucleus | 53.2 | 67.16 |
| KRH62113 | Soybean | nucleus | 58.04 | 60.99 |
| GSMUA_Achr6P14860_001 | Banana | nucleus | 53.59 | 60.83 |
| Zm00001d036977_P001 | Maize | nucleus | 55.69 | 60.68 |
| OQU76574 | Sorghum | nucleus | 55.03 | 60.58 |
| GSMUA_Achr10P... | Banana | nucleus | 55.03 | 60.58 |
| KRH52804 | Soybean | nucleus | 57.52 | 60.11 |
| Os02t0227400-01 | Rice | extracellular | 47.84 | 60.0 |
| VIT_11s0016g03040.t01 | Wine grape | nucleus | 45.1 | 57.69 |
| TraesCS7D01G365600.4 | Wheat | nucleus | 54.38 | 57.3 |
| TraesCS7B01G270600.4 | Wheat | nucleus | 54.12 | 57.1 |
| HORVU7Hr1G088370.13 | Barley | nucleus | 53.99 | 56.89 |
| Solyc08g066200.2.1 | Tomato | nucleus | 58.04 | 56.42 |
| TraesCS7A01G357100.1 | Wheat | nucleus | 53.73 | 56.3 |
| Zm00001d053559_P007 | Maize | mitochondrion | 49.54 | 55.33 |
| KXG29853 | Sorghum | mitochondrion | 49.8 | 54.58 |
| GSMUA_Achr9P16270_001 | Banana | nucleus | 55.69 | 53.25 |
| HORVU6Hr1G040920.3 | Barley | mitochondrion, nucleus | 47.45 | 53.15 |
| TraesCS6D01G174400.1 | Wheat | cytosol, mitochondrion | 47.71 | 52.07 |
| Zm00001d046255_P035 | Maize | nucleus | 55.29 | 51.27 |
| TraesCS6A01G191200.1 | Wheat | cytosol, mitochondrion | 46.67 | 51.15 |
| TraesCS6B01G219800.3 | Wheat | cytosol, mitochondrion | 46.14 | 50.36 |
| AT1G17980.1 | Thale cress | nucleus | 42.75 | 45.86 |
| AT3G06560.1 | Thale cress | nucleus | 22.75 | 34.32 |
Protein Annotations
| Gene3D:1.10.1410.10 | MapMan:16.2.1.1.1 | Gene3D:3.30.460.10 | Gene3D:3.30.70.590 | EntrezGene:829421 | ProteinID:AEE86133.1 |
| ArrayExpress:AT4G32850 | EnsemblPlantsGene:AT4G32850 | RefSeq:AT4G32850 | TAIR:AT4G32850 | RefSeq:AT4G32850-TAIR-G | EnsemblPlants:AT4G32850.8 |
| TAIR:AT4G32850.8 | Unigene:At.25084 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0004652 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016779 |
| GO:GO:0031123 | GO:GO:0043631 | RefSeq:NP_001031779.1 | InterPro:NuclTrfase_I-like_C | PFAM:PF01909 | PFAM:PF04926 |
| PFAM:PF04928 | PIRSF:PIRSF018425 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0003011 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0009073 | PO:PO:0009074 | PO:PO:0020030 | PO:PO:0020031 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR10682 | PANTHER:PTHR10682:SF29 |
| InterPro:PolA_pol_RNA-bd_dom | InterPro:PolA_pol_cen_dom | InterPro:PolyA_polymerase | InterPro:Polymerase_NTP_transf_dom | SUPFAM:SSF55003 | SUPFAM:SSF81301 |
| SUPFAM:SSF81631 | UniParc:UPI00005DC0C5 | Symbol:nPAP | : | : | : |
Description
nPAPnuclear poly(a) polymerase [Source:TAIR;Acc:AT4G32850]
Coordinates
chr4:+:15849772..15854460
Molecular Weight (calculated)
86633.7 Da
IEP (calculated)
5.238
GRAVY (calculated)
-0.456
Length
765 amino acids
Sequence
(BLAST)
(BLAST)
001: MMVGTQNLGG SLPPLNSPKS YGITKPLSLA GPSSADIKRN VELEKYLVDE GLYESKDDTM RREEVLGRID QIVKHWVKQL TQQRGYTDQM VEDANAVIFT
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQSNSLVSGM EKSEDRARSE SFQKSQIRHA IDVKKTGDFN SNCCVGQTTE SRSFW
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQSNSLVSGM EKSEDRARSE SFQKSQIRHA IDVKKTGDFN SNCCVGQTTE SRSFW
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.