CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62113	Soybean	nucleus	92.21	92.72
PGSC0003DMT400075574	Potato	nucleus	59.02	71.29
Solyc12g095890.1.1	Tomato	nucleus	58.47	70.51
Bra011388.1-P	Field mustard	nucleus	38.66	67.7
OQU76574	Sorghum	nucleus	58.47	61.58
GSMUA_Achr10P...	Banana	nucleus	58.47	61.58
CDX68897	Canola	nucleus	60.66	61.24
Zm00001d036977_P001	Maize	nucleus	58.47	60.97
CDX75292	Canola	nucleus	60.52	60.77
Os02t0227400-01	Rice	extracellular	50.27	60.33
GSMUA_Achr6P14860_001	Banana	nucleus	55.33	60.09
VIT_11s0016g03040.t01	Wine grape	nucleus	48.63	59.53
HORVU7Hr1G088370.13	Barley	nucleus	58.61	59.09
TraesCS7D01G365600.4	Wheat	nucleus	58.47	58.95
Solyc08g066200.2.1	Tomato	nucleus	63.25	58.83
TraesCS7B01G270600.4	Wheat	nucleus	58.2	58.76
TraesCS7A01G357100.1	Wheat	nucleus	58.33	58.49
CDX77017	Canola	nucleus	59.97	58.46
CDY35331	Canola	nucleus	60.38	58.01
KRH47201	Soybean	nucleus	55.33	57.53
AT4G32850.8	Thale cress	nucleus	60.11	57.52
KRH44269	Soybean	nucleus	55.19	57.39
Bra034276.1-P	Field mustard	cytosol	60.38	57.33
Zm00001d053559_P007	Maize	mitochondrion	53.42	57.08
KXG29853	Sorghum	mitochondrion	52.6	55.16
AT2G25850.2	Thale cress	nucleus	59.97	54.88
HORVU6Hr1G040920.3	Barley	mitochondrion, nucleus	50.96	54.61
TraesCS6D01G174400.1	Wheat	cytosol, mitochondrion	51.09	53.35
GSMUA_Achr9P16270_001	Banana	nucleus	57.92	53.0
TraesCS6A01G191200.1	Wheat	cytosol, mitochondrion	49.73	52.15
TraesCS6B01G219800.3	Wheat	cytosol, mitochondrion	49.59	51.78
Zm00001d046255_P035	Maize	nucleus	57.38	50.91
KRH48590	Soybean	nucleus	47.81	46.24
KRH39125	Soybean	nucleus	47.54	45.97
KRH60473	Soybean	cytosol	33.61	41.28

Protein Annotations

Gene3D:1.10.1410.10	EntrezGene:100802620	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	EMBL:ACUP02003436
EnsemblPlantsGene:GLYMA_06G088500	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004652
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006378	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779
GO:GO:0031123	GO:GO:0043631	UniProt:I1K9H3	EnsemblPlants:KRH52804	ProteinID:KRH52804	ProteinID:KRH52804.1
InterPro:NuclTrfase_I-like_C	PFAM:PF01909	PFAM:PF04926	PFAM:PF04928	PANTHER:PTHR10682	PANTHER:PTHR10682:SF29
InterPro:PolA_pol_RNA-bd_dom	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301
SUPFAM:SSF81631	UniParc:UPI000233A8B4	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:6855021..6861380

Molecular Weight (calculated)

82637.2 Da

IEP (calculated)

5.465

GRAVY (calculated)

-0.409

Length

732 amino acids

Sequence
(BLAST)

001: MAVSDSPSGG STPPHQEQQA NSKYGFTKPL SLAGPTDADL QRNNDLDKFL LDSGLYESNE ESAARKEVLH RLDQIVKSWV KQLTRQRGYT DQMVEDANAV
101: IFTFGSYRLG VHGPGVDIDT LCIGPSYVNR EEDFFIILHN ILAEMEEVSE LQPVPDAHVP VMKFKFQGIS IDLLYASISL LVVPEDLDIS HGSVLYDVDE
201: PTVRSLNGCR VADQILKLVP NVEHFRTTLR CLKFWAKRRG VYSNVTGFLG GVNWAILVAR ICQLYPNAIP SMLVSRFFRV YTQWRWPNPV MLCSIEENEL
301: GFPIWDPRRN PRDRFHTMPI ITPAYPCMNS SYNVSASTLR VMVDQFCYGN KICDEIELNK AQWSALFQPY IFFEAYKNYL QVDIIASDTD DLLAWRGWVE
401: SRLRMLTLKI ERDTNGMLQC HPYPHEYVDT SKPCAHSAFF MGLQRKEGVR GQEGQQFDIR GTVDEFRQEI NMYMYWKPGM DIFVSHVRRK QLPAFVFPDG
501: YKRTRMPRHI SHQAEITGDD ATNCYSGPGL SERCIKRKNY SEMVDKKPDK PDKRASISPQ RLECVSPESC TGKSGGTAQM SIECIKGVRL AGSTTKDANS
601: NCKIKSSDAL PGSGLRTEVA DMQISEAGFV NTTHDMLKSR SVEVPNENEV VNGDKAQDLA LDCLESAETE STNSLSNYEE GDIDMDQRLD KACNFITRAE
701: CSDYVPNASS QNLNCEMSVS EVLYKLKMGL GG

Best Arabidopsis Sequence Match ( AT4G32850.5 )
(BLAST)

001: MMVGTQNLGG SLPPLNSPKS YGITKPLSLA GPSSADIKRN VELEKYLVDE GLYESKDDTM RREEVLGRID QIVKHWVKQL TQQRGYTDQM VEDANAVIFT
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQSNSLVSGM EKSEDRARSE SFQKSQIRLS LKSTV

Arabidopsis Description

nPAPnuclear poly(a) polymerase [Source:TAIR;Acc:AT4G32850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.