Factsheet for Os02t0227400-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 4
mitochondrion 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

extracellular: 25047395

msms PMID: 25047395 doi

JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0558766-00	Rice	cytosol	27.7	72.84
Zm00001d053559_P007	Maize	mitochondrion	75.9	67.59
HORVU6Hr1G040920.3	Barley	mitochondrion, nucleus	75.57	67.5
TraesCS6D01G174400.1	Wheat	cytosol, mitochondrion	77.54	67.47
TraesCS6A01G191200.1	Wheat	cytosol, mitochondrion	75.25	65.76
KXG29853	Sorghum	mitochondrion	75.08	65.62
TraesCS6B01G219800.3	Wheat	cytosol, mitochondrion	74.75	65.05
Bra011388.1-P	Field mustard	nucleus	42.95	62.68
PGSC0003DMT400075574	Potato	nucleus	59.34	59.74
Solyc12g095890.1.1	Tomato	nucleus	59.18	59.47
GSMUA_Achr10P...	Banana	nucleus	63.44	55.68
GSMUA_Achr6P14860_001	Banana	nucleus	58.85	53.26
VIT_11s0016g03040.t01	Wine grape	nucleus	52.13	53.18
CDX68897	Canola	nucleus	60.82	51.17
Os01t0702900-01	Rice	extracellular	10.82	51.16
KRH62113	Soybean	nucleus	60.82	50.96
CDX75292	Canola	nucleus	60.82	50.89
Os04t0588350-00	Rice	nucleus, plastid	46.23	50.72
KRH52804	Soybean	nucleus	60.33	50.27
CDX77017	Canola	nucleus	59.34	48.2
CDY35331	Canola	nucleus	59.84	47.9
AT4G32850.8	Thale cress	nucleus	60.0	47.84
Bra034276.1-P	Field mustard	cytosol	59.84	47.34
GSMUA_Achr9P16270_001	Banana	nucleus	61.8	47.12
Solyc08g066200.2.1	Tomato	nucleus	60.49	46.89
Os06t0319600-01	Rice	cytosol	9.84	46.51
AT2G25850.2	Thale cress	nucleus	58.85	44.88
Os07t0688500-00	Rice	cytosol	25.57	29.77
Os03t0313300-01	Rice	mitochondrion	25.41	28.39
Os06t0558700-01	Rice	nucleus	13.77	25.53

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	EntrezGene:4328790	ProteinID:BAD25861.1
ProteinID:BAS77748.1	ProteinID:EAZ22305.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006378	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016779	GO:GO:0031123
GO:GO:0043631	GO:GO:0046872	InterPro:NuclTrfase_I-like_C	EnsemblPlantsGene:Os02g0227400	EnsemblPlants:Os02t0227400-01	PFAM:PF01909
PFAM:PF04926	PFAM:PF04928	PIRSF:PIRSF018425	PANTHER:PTHR10682	PANTHER:PTHR10682:SF27	InterPro:PolA_pol_RNA-bd_dom
InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	UniProt:Q6H5Y8	SUPFAM:SSF55003	SUPFAM:SSF81301
SUPFAM:SSF81631	UniParc:UPI00003B4572	RefSeq:XP_015626314.1	RefSeq:XP_015626315.1	SEG:seg	:

Description

Poly(A) polymerase, RNA-binding region domain containing protein. (Os02t0227400-01)

Coordinates

chr2:+:7144545..7150536

Molecular Weight (calculated)

68094.5 Da

IEP (calculated)

5.861

GRAVY (calculated)

-0.243

Length

610 amino acids

Sequence
(BLAST)

001: MAGSFVAVRG KPRSSPKRSG GGGGADPPLS LAMPTVADLH KTAELEKFLV EAGLYEGEEE SAKREEVLRE IDQIVKEWVK KVTIQKGYSE QMVKEANAVL
101: FTFGSYRLGV HGPGADIDAL CIGPSYVKRE EEFFVMLYGA LSEMEEVTEL QPVPDAHVPV MKFKFRGLPI DLLYASVSLP VIPPDFDISQ GSVLCDVDEA
201: TVRSLNGCRV ADQILRLVPN AEIFRKTLRC LKYWAQRRGV YSNVTGLLGG VSWALLVARV CQLYPNAVPS MLVSRFFRVF TQWQWPNPVM LCAIENDDNL
301: GFAVWDPRKN PRDRSHVMPI ITPAYPCMNS SYNVSTSTLR VIMEQFQFGN KICQEIELNK ASWSSLFEPF QFFEAYTRYL VVDIVADDDD DLRLWKGWIE
401: SRLRQLTLKI ERDTKGMLQC HPNPCEYADP SIQCAHCAFY MGLSRKEGMK IRGQKFDIRG TVDEFMHEIG MYTQWKSGMD LAVTHVRKKE IPLYVFEQGC
501: QKTRPPTPIC AEQQDQSDKN DSEVCTTTAS LVGQLKRKYH SVGGADVDSF KSVRRASVSP ACEEASIQLH DDANFGLTNC STSPHGSEGS TVSGNSCAAV
601: GTIGLVDETS

Best Arabidopsis Sequence Match ( AT4G32850.2 )
(BLAST)

001: MMVGTQNLGG SLPPLNSPKS YGITKPLSLA GPSSADIKRN VELEKYLVDE GLYESKDDTM RREEVLGRID QIVKHWVKQL TQQRGYTDQM VEDANAVIFT
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQSNSLVSGM EKSEDRASTS RLSLKSTV

Arabidopsis Description

nPAPnuclear poly(a) polymerase [Source:TAIR;Acc:AT4G32850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.