Factsheet for Bra034276.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
golgi 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35331	Canola	nucleus	97.28	98.43
CDX77017	Canola	nucleus	94.16	96.67
Bra011388.1-P	Field mustard	nucleus	42.41	78.23
AT2G25850.2	Thale cress	nucleus	80.29	77.38
PGSC0003DMT400075574	Potato	nucleus	53.18	67.66
Solyc12g095890.1.1	Tomato	nucleus	52.79	67.05
GSMUA_Achr10P...	Banana	nucleus	54.86	60.86
KRH62113	Soybean	nucleus	57.2	60.58
OQU76574	Sorghum	nucleus	54.47	60.43
KRH52804	Soybean	nucleus	57.33	60.38
Zm00001d036977_P001	Maize	nucleus	54.6	59.97
Os02t0227400-01	Rice	extracellular	47.34	59.84
GSMUA_Achr6P14860_001	Banana	nucleus	51.49	58.9
Solyc08g066200.2.1	Tomato	nucleus	58.11	56.92
VIT_11s0016g03040.t01	Wine grape	nucleus	44.1	56.86
TraesCS7B01G270600.4	Wheat	nucleus	53.44	56.83
TraesCS7D01G365600.4	Wheat	nucleus	53.44	56.75
HORVU7Hr1G088370.13	Barley	nucleus	53.05	56.34
TraesCS7A01G357100.1	Wheat	nucleus	53.18	56.16
Zm00001d053559_P007	Maize	mitochondrion	49.03	55.18
KXG29853	Sorghum	mitochondrion	49.42	54.58
HORVU6Hr1G040920.3	Barley	mitochondrion, nucleus	47.21	53.29
GSMUA_Achr9P16270_001	Banana	nucleus	54.99	53.0
TraesCS6D01G174400.1	Wheat	cytosol, mitochondrion	47.47	52.21
TraesCS6A01G191200.1	Wheat	cytosol, mitochondrion	46.3	51.15
TraesCS6B01G219800.3	Wheat	cytosol, mitochondrion	46.04	50.64
Zm00001d046255_P035	Maize	nucleus	53.7	50.18
Bra024894.1-P	Field mustard	nucleus	41.5	47.62
Bra016573.1-P	Field mustard	nucleus	42.28	47.11
Bra031010.1-P	Field mustard	nucleus	41.5	46.44
Bra029588.1-P	Field mustard	nucleus	22.7	34.05

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	EnsemblPlantsGene:Bra034276	EnsemblPlants:Bra034276.1
EnsemblPlants:Bra034276.1-P	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004652
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0031123
GO:GO:0043631	UniProt:M4EZN3	InterPro:NuclTrfase_I-like_C	PFAM:PF01909	PFAM:PF04926	PFAM:PF04928
PANTHER:PTHR10682	PANTHER:PTHR10682:SF29	InterPro:PolA_pol_RNA-bd_dom	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom
SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631	UniParc:UPI00025450DE	SEG:seg	:

Description

AT4G32850 (E=3e-297) nPAP | nPAP (NUCLEAR POLY(A) POLYMERASE); nucleotidyltransferase/ protein binding

Coordinates

chrA04:-:11577642..11581794

Molecular Weight (calculated)

87194.0 Da

IEP (calculated)

5.802

GRAVY (calculated)

-0.448

Length

771 amino acids

Sequence
(BLAST)

001: MVGTQALKSY GITKPLSVSG PSAADLKRNL ELEKFLVDEG LYESKEETMR REEVLGRIDQ IVKEWVKELT HQRGYSDQMM EDANALIFTF GSYRLGVHGP
101: GADIDTLCVG PSYVNREEDF FIILRDILAE MEEVTDLQPV TDAHVPVMKF KFQGISIDLL YASISLLVVP QDLDISNSSV LSDVDEQTVR SLNGCRVADQ
201: ILKLVPNFEH FRTTLRCMKY WAKRRGVYSN VTGFLGGVNW ALLVARLCQL YPNAIPSMLV SRFFRVYTQW RWPNPVMLCA IEEDELGIPV WDPRKYHRDR
301: YHLMPIITPA YPCMNSSYNV SQSTLRVMME QFQYGNKICQ EIELNKQHWS SLFEQYMFFE AYKNYLQVDV LAADAEDLLA WKGWVESRFR QLTLKIERDT
401: NGMLMCHPQP NEYVDTSKQF RHCAFFMGLQ RAEGYGGQEC QQFDIRGTVD EFRQDVNMYM FWRPGMDVFV SHVRRRQLPP FVFPNGYKRF RQPKLQNQQG
501: GEPGEPVESL SANVERHAKR KNDNELMDTR PEKPEKRASV SPPSVDVVSP ESSAITTGGT PPIGIVSGPR TECLVTSDIG CSIPNDLNSG SKQNVEVDNR
601: SLVQGCRDLA EPVGKDARPD PSVVVTCEGG QNKEKGRVVD SASINDTDKQ RLPRRPNLKE DVDRVERESM LGEIADGVLQ NGLCRRSLDH EGFLAAASLD
701: SSGEHRNLHS DGLLKSGLSE ELQTNNLLMG MGRPEDGARS ESLQNSLMRH CSGRKLGELG VKLGAGSLHF V

Best Arabidopsis Sequence Match ( AT2G25850.2 )
(BLAST)

001: MVSTQQRTDD DSSQPVKASL KSYGITEPLS IAGPSAADVK RNLELEKFLV DEGLYESKEE TMRREEVVVR IDQIVKHWVK QLTRQRGYTD QMVEDANAVI
101: FTFGSYRLGV HGPMADIDTL CVGPSYVNRE EDFFIFFRDI LAEMEEVTEL QPVTDAHVPV MKFKFQGISI DLLYASISLL VIPQDLDISN SSVLCDVDEQ
201: TVRSLNGCRV ADQILKLVPN SEHFRTTLRC LKYWAKKRGV YSNVTGFLGG VNWALLVARL CQFYPNAIPS MLVSRFFRVY TQWRWPNPVM LCAIEEDDLS
301: FPVWDPRKNH RDRYHLMPII TPAYPCMNSS YNVSQSTLRV MTEQFQFGNT ICQEIELNKQ HWSSLFQQYM FFEAYKNYLQ VDVLAADAED LLAWKGWVES
401: RFRQLTLKIE RDTNGMLMCH PQPNEYVDTS KQFRHCAFFM GLQRADGFGG QECQQFDIRG TVDEFRQEVN MYMFWRPGMD VHVSHVRRRQ LPSFVFPNGY
501: KRSRQSRHQS QQCREPGDEG VGSLSDSVER YAKRKNDDEI MNSRPEKREK RASCSLHTLD AASPDSSGIT TSGTPQIGIV PGPRAECLVT GDLVCNVTSL
601: PNVEVEAEKF ISKITELRKF SQYEHTSGSE QILEVDSRAL VQSYHDLAEP VAKHVRPDLS ALLACEGGQN KEIGHDMGSE SINDTDTQHL PRRLNVNEDV
701: DEVEREAKLG EIAGGVLWNG HCGRNLDHEG FVTPANLDSA VENRNLHSDG LFKSGLPEEL QSNSLLSGTG KLDDGARSES LQNEMMRHVF LQPIIGLCKS

Arabidopsis Description

PAPS2PAPS2 [Source:UniProtKB/TrEMBL;Acc:A0A178VXR1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.