CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52804	Soybean	nucleus	92.72	92.21
PGSC0003DMT400075574	Potato	nucleus	59.34	71.29
Solyc12g095890.1.1	Tomato	nucleus	58.79	70.51
Bra011388.1-P	Field mustard	nucleus	39.42	68.66
GSMUA_Achr10P...	Banana	nucleus	59.07	61.87
CDX68897	Canola	nucleus	61.4	61.66
OQU76574	Sorghum	nucleus	58.79	61.58
Zm00001d036977_P001	Maize	nucleus	59.34	61.54
CDX75292	Canola	nucleus	61.26	61.18
Os02t0227400-01	Rice	extracellular	50.96	60.82
GSMUA_Achr6P14860_001	Banana	nucleus	55.63	60.09
VIT_11s0016g03040.t01	Wine grape	nucleus	48.49	59.03
Solyc08g066200.2.1	Tomato	nucleus	63.6	58.83
HORVU7Hr1G088370.13	Barley	nucleus	58.52	58.68
TraesCS7D01G365600.4	Wheat	nucleus	58.38	58.54
TraesCS7A01G357100.1	Wheat	nucleus	58.52	58.36
TraesCS7B01G270600.4	Wheat	nucleus	58.1	58.34
CDX77017	Canola	nucleus	60.16	58.32
AT4G32850.8	Thale cress	nucleus	60.99	58.04
CDY35331	Canola	nucleus	60.58	57.87
KRH44269	Soybean	nucleus	55.77	57.67
KRH47201	Soybean	nucleus	55.49	57.39
Zm00001d053559_P007	Maize	mitochondrion	53.98	57.37
Bra034276.1-P	Field mustard	cytosol	60.58	57.2
KXG29853	Sorghum	mitochondrion	53.16	55.44
AT2G25850.2	Thale cress	nucleus	60.71	55.25
HORVU6Hr1G040920.3	Barley	mitochondrion, nucleus	51.65	55.05
TraesCS6D01G174400.1	Wheat	cytosol, mitochondrion	51.79	53.78
GSMUA_Achr9P16270_001	Banana	nucleus	57.97	52.75
TraesCS6A01G191200.1	Wheat	cytosol, mitochondrion	50.41	52.58
TraesCS6B01G219800.3	Wheat	cytosol, mitochondrion	50.27	52.21
Zm00001d046255_P035	Maize	nucleus	57.97	51.15
KRH48590	Soybean	nucleus	47.53	45.71
KRH39125	Soybean	nucleus	47.25	45.44
KRH60473	Soybean	cytosol	34.2	41.78

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	EMBL:ACUP02002219	EnsemblPlantsGene:GLYMA_04G086800
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006378
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0031123
GO:GO:0043631	UniProt:K7KIY8	EnsemblPlants:KRH62113	ProteinID:KRH62113	ProteinID:KRH62113.1	InterPro:NuclTrfase_I-like_C
PFAM:PF01909	PFAM:PF04926	PFAM:PF04928	PANTHER:PTHR10682	PANTHER:PTHR10682:SF29	InterPro:PolA_pol_RNA-bd_dom
InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631
UniParc:UPI0002958F8C	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:7396904..7403264

Molecular Weight (calculated)

82075.1 Da

IEP (calculated)

5.044

GRAVY (calculated)

-0.447

Length

728 amino acids

Sequence
(BLAST)

001: MAVSDSPSGG STPPQQEQQP NKYAFTKPLS LAGPTDADLQ RNNELDKFLL DSGLYESNEE SAARKEVLHR LDQIVKNWVK QLTRQRGYTD QMVEDANAVI
101: FTFGSYRLGV HGPGVDIDTL CIGPSYVNRE EDFFVILHNI LAEMEEVSEL QPVPDAHVPV MKFKFQGISI DLLYASISLL VVPEDLDISH GSVLYDVDEP
201: TVRSLNGCRV ADQILKLVPN VEHFRTALRC LKFWAKRRGV YSNVTGFLGG VNWAILVARI CQLYPNAIPS MLVSRFFRVY TQWRWPNPVM LCSIEENELG
301: FPIWDPRRNP RDRFHTMPII TPAYPCMNSS YNVSASTLRV MMEQFRYGNK ICDEIELNKA QWSALFQPYI FFEAYKNYLQ VDIIASDADD LLAWRGWVES
401: RLRLLTLKIE RDTNGMLQCH PYPNEYVDTS KLCAHSAFFM GLQRKEGVRG QEGQQFDIRG TVDEFRQEIN MYMYWKPGMD IFVSHVRRKQ LPAFVFPGGY
501: KRTRMPRHIS HQAEKTGDDA TKCYSGSGSG SSERCIKRKS CPEMVDKKPG KPDKRASISP QRLECVSPES CTSKSGGTTQ MSIECIEVVR LAGSTTKDAN
601: DNCEVKSSDA LPGSGLSTEV ADMQISEPGF VDTTHDMLKS RSVEIPNENG VLNGDKAQDL ALDCLESAET ESTNSLSNYK EGDNDTDQRL DKECNFIPRA
701: ECSDYVPNAS SQNLNCEGDV CVADPDQF

Best Arabidopsis Sequence Match ( AT4G32850.2 )
(BLAST)

001: MMVGTQNLGG SLPPLNSPKS YGITKPLSLA GPSSADIKRN VELEKYLVDE GLYESKDDTM RREEVLGRID QIVKHWVKQL TQQRGYTDQM VEDANAVIFT
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQSNSLVSGM EKSEDRASTS RLSLKSTV

Arabidopsis Description

nPAPnuclear poly(a) polymerase [Source:TAIR;Acc:AT4G32850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.