Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr10P... | Banana | nucleus | 70.18 | 68.06 |
Bra011388.1-P | Field mustard | nucleus | 40.95 | 66.03 |
PGSC0003DMT400075574 | Potato | nucleus | 59.35 | 66.01 |
Solyc12g095890.1.1 | Tomato | nucleus | 58.75 | 65.24 |
OQU76574 | Sorghum | nucleus | 62.17 | 60.29 |
Zm00001d036977_P001 | Maize | nucleus | 61.57 | 59.12 |
Os02t0227400-01 | Rice | extracellular | 53.26 | 58.85 |
GSMUA_Achr9P16270_001 | Banana | nucleus | 67.95 | 57.25 |
VIT_11s0016g03040.t01 | Wine grape | nucleus | 50.74 | 57.19 |
CDX68897 | Canola | nucleus | 60.98 | 56.69 |
CDX75292 | Canola | nucleus | 61.13 | 56.52 |
HORVU7Hr1G088370.13 | Barley | nucleus | 60.83 | 56.47 |
TraesCS7D01G365600.4 | Wheat | nucleus | 60.68 | 56.34 |
TraesCS7B01G270600.4 | Wheat | nucleus | 60.53 | 56.28 |
TraesCS7A01G357100.1 | Wheat | nucleus | 60.83 | 56.16 |
Zm00001d053559_P007 | Maize | mitochondrion | 56.97 | 56.06 |
KRH62113 | Soybean | nucleus | 60.09 | 55.63 |
KRH52804 | Soybean | nucleus | 60.09 | 55.33 |
KXG29853 | Sorghum | mitochondrion | 56.68 | 54.73 |
AT4G32850.8 | Thale cress | nucleus | 60.83 | 53.59 |
CDX77017 | Canola | nucleus | 59.5 | 53.4 |
HORVU6Hr1G040920.3 | Barley | mitochondrion, nucleus | 53.86 | 53.15 |
TraesCS6D01G174400.1 | Wheat | cytosol, mitochondrion | 54.75 | 52.64 |
CDY35331 | Canola | nucleus | 59.05 | 52.23 |
Solyc08g066200.2.1 | Tomato | nucleus | 60.83 | 52.1 |
TraesCS6A01G191200.1 | Wheat | cytosol, mitochondrion | 53.56 | 51.72 |
Bra034276.1-P | Field mustard | cytosol | 58.9 | 51.49 |
TraesCS6B01G219800.3 | Wheat | cytosol, mitochondrion | 53.12 | 51.07 |
Zm00001d046255_P035 | Maize | nucleus | 61.42 | 50.18 |
AT2G25850.2 | Thale cress | nucleus | 58.9 | 49.62 |
GSMUA_AchrUn_... | Banana | nucleus | 51.04 | 46.3 |
GSMUA_Achr8P29920_001 | Banana | cytosol, golgi, plastid | 26.85 | 32.5 |
Protein Annotations
Gene3D:1.10.1410.10 | MapMan:16.2.1.1.1 | Gene3D:3.30.460.10 | Gene3D:3.30.70.590 | GO:GO:0000166 | GO:GO:0003674 |
GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004652 | GO:GO:0005488 | GO:GO:0005524 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016779 | GO:GO:0031123 | GO:GO:0043631 |
GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr6G14860_001 | EnsemblPlants:GSMUA_Achr6P14860_001 | EnsemblPlants:GSMUA_Achr6T14860_001 | UniProt:M0T734 | InterPro:NuclTrfase_I-like_C |
PFAM:PF01909 | PFAM:PF04926 | PFAM:PF04928 | PIRSF:PIRSF018425 | PANTHER:PTHR10682 | PANTHER:PTHR10682:SF29 |
InterPro:PolA_pol_RNA-bd_dom | InterPro:PolA_pol_cen_dom | InterPro:PolyA_polymerase | InterPro:Polymerase_NTP_transf_dom | SUPFAM:SSF55003 | SUPFAM:SSF81301 |
SUPFAM:SSF81631 | UniParc:UPI0002957D4E | : | : | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G14860_001]
Coordinates
chr6:-:9872050..9879776
Molecular Weight (calculated)
76881.3 Da
IEP (calculated)
6.217
GRAVY (calculated)
-0.532
Length
674 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSPSPPAPR QYGITKPIST AGPTEADLKR TTELEKFLVD AGLYESEEEA LKRENVLGEL GKIVKSWVKQ LTRQRGYSDQ MVEDASAVIF TFGSYRLGVH
101: GPGADIDTLC VGPSYVSREE DFFITLHDIL AEIDEVSELQ PVPDAHVPVM KFKFDGISID LLYASISQLV VPEDLDISHV SVLYNVDEAT VRSLNGCRVA
201: DQIIRLVPNI ENFRTTLRCL KLWAKKRGVY SNVIGFLGGV NWAILVACVC QLYPNAVPST LVSRFFRVYT QWRWPNPVRL CDIEEAELGF PVWDSRKNPR
301: DRTHHMPIIT PAYPCMNSSY NVSTSTLRVM TEQFQIGNNI CEDIELNKTG WGALFEPYPF FETYKNYLQV DIVAADAEDL RSWKGWVESR LRQLTLKIER
401: DTCGILQCHP YPNEYVDPFK QFSHCVFFMG LQRTQGMKIQ EGQRFDIRGT VEEFKGDVES YLFWKPGMEI HVTHVRRKQI PSYVFPEGYK RPRPSRPVCQ
501: QLTDKTSGED IREHCGGSLE RNCKRKIDVD CLDDKPNKPE KHTLISPNQE NISISDQQDQ AGINNDQKDG KEKERHCKRK IDCLGSKPNK PEKHALVNAS
601: QQKISTPDQQ DQAGIDEKQK ESEKDNQVFK RVDDDSISPS RQPQLFSSVT SSISGMICHL IWHKDQIETK FDPC
101: GPGADIDTLC VGPSYVSREE DFFITLHDIL AEIDEVSELQ PVPDAHVPVM KFKFDGISID LLYASISQLV VPEDLDISHV SVLYNVDEAT VRSLNGCRVA
201: DQIIRLVPNI ENFRTTLRCL KLWAKKRGVY SNVIGFLGGV NWAILVACVC QLYPNAVPST LVSRFFRVYT QWRWPNPVRL CDIEEAELGF PVWDSRKNPR
301: DRTHHMPIIT PAYPCMNSSY NVSTSTLRVM TEQFQIGNNI CEDIELNKTG WGALFEPYPF FETYKNYLQV DIVAADAEDL RSWKGWVESR LRQLTLKIER
401: DTCGILQCHP YPNEYVDPFK QFSHCVFFMG LQRTQGMKIQ EGQRFDIRGT VEEFKGDVES YLFWKPGMEI HVTHVRRKQI PSYVFPEGYK RPRPSRPVCQ
501: QLTDKTSGED IREHCGGSLE RNCKRKIDVD CLDDKPNKPE KHTLISPNQE NISISDQQDQ AGINNDQKDG KEKERHCKRK IDCLGSKPNK PEKHALVNAS
601: QQKISTPDQQ DQAGIDEKQK ESEKDNQVFK RVDDDSISPS RQPQLFSSVT SSISGMICHL IWHKDQIETK FDPC
001: MMVGTQNLGG SLPPLNSPKS YGITKPLSLA GPSSADIKRN VELEKYLVDE GLYESKDDTM RREEVLGRID QIVKHWVKQL TQQRGYTDQM VEDANAVIFT
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQSNSLVSGM EKSEDRARSE SFQKSQIRHV CYAKS
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQSNSLVSGM EKSEDRARSE SFQKSQIRHV CYAKS
Arabidopsis Description
nPAPnuclear poly(a) polymerase [Source:TAIR;Acc:AT4G32850]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.