Factsheet for GSMUA_Achr8P29920_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid, cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr3P07540_001
GSMUA_Achr4P14570_001
GSMUA_Achr6P19820_001
GSMUA_Achr7P27630_001
GSMUA_Achr9P30440_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06560.1	GSMUA_Achr6P19820_001	AT1G30460.1	16897494
AT3G06560.1	GSMUA_Achr9P30440_001	AT1G30460.1	16897494
AT3G06560.1	GSMUA_Achr6P19820_001	AT1G30460.1	18479511
AT3G06560.1	GSMUA_Achr9P30440_001	AT1G30460.1	18479511
AT3G06560.1	GSMUA_Achr3P07540_001	AT2G01730.1	16897494
AT3G06560.1	GSMUA_Achr11P...	AT5G51660.1	16897494
AT3G06560.1	GSMUA_Achr11P...	AT5G51660.1	16897494
AT3G06560.1	GSMUA_Achr11P...	AT5G51660.1	16897494
AT3G06560.1	GSMUA_Achr4P14570_001	AT5G58040.1	18479511
AT3G06560.1	GSMUA_Achr7P27630_001	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074732	Potato	cytosol, peroxisome, plastid	48.47	54.11
Solyc01g058260.2.1	Tomato	cytosol, peroxisome, plastid	45.42	52.82
Os07t0688500-00	Rice	cytosol	48.29	51.34
Solyc12g099180.1.1	Tomato	cytosol	40.04	51.26
Zm00001d021105_P001	Maize	endoplasmic reticulum, plasma membrane	13.11	50.34
VIT_05s0077g00650.t01	Wine grape	plastid	50.81	50.27
TraesCS2A01G096500.1	Wheat	cytosol, mitochondrion, nucleus, vacuole	44.52	49.8
CDY24682	Canola	nucleus	43.45	49.49
AT3G06560.1	Thale cress	nucleus	44.88	49.31
HORVU0Hr1G029140.2	Barley	cytosol	40.4	49.02
HORVU0Hr1G035930.1	Barley	cytosol	40.4	49.02
CDY05277	Canola	nucleus	44.7	48.54
PGSC0003DMT400011757	Potato	nucleus	48.47	48.21
Zm00001d047607_P001	Maize	cytosol, plasma membrane, plastid	43.45	47.64
Bra029588.1-P	Field mustard	nucleus	43.81	47.47
TraesCS2B01G112000.1	Wheat	cytosol, plasma membrane, plastid	44.7	46.89
Zm00001d028920_P004	Maize	cytosol, plasma membrane, plastid	45.24	46.67
Zm00001d012429_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	13.29	46.54
TraesCS4A01G123900.1	Wheat	nucleus	45.06	46.48
TraesCS4B01G180500.1	Wheat	nucleus	44.88	46.3
Os03t0313300-01	Rice	mitochondrion	45.24	46.15
TraesCS2D01G095000.1	Wheat	cytosol	43.81	46.12
TraesCS4D01G182000.1	Wheat	nucleus	44.34	45.74
HORVU4Hr1G052840.1	Barley	plastid	44.17	45.39
Zm00001d022535_P004	Maize	endoplasmic reticulum, plasma membrane	43.45	45.15
KXG36988	Sorghum	endoplasmic reticulum, plasma membrane	44.52	44.93
OQU92698	Sorghum	cytosol, plasma membrane, plastid	45.6	41.98
HORVU2Hr1G016100.3	Barley	cytosol	38.78	40.75
GSMUA_Achr6P14860_001	Banana	nucleus	32.5	26.85
GSMUA_Achr10P...	Banana	nucleus	31.78	25.47
GSMUA_AchrUn_...	Banana	nucleus	31.6	23.69
GSMUA_Achr9P16270_001	Banana	nucleus	32.67	22.75

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740
GO:GO:0016779	GO:GO:0031123	GO:GO:0043631	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr8G29920_001	EnsemblPlants:GSMUA_Achr8P29920_001
EnsemblPlants:GSMUA_Achr8T29920_001	UniProt:M0TUU4	InterPro:NuclTrfase_I-like_C	PFAM:PF01909	PFAM:PF04926	PFAM:PF04928
PIRSF:PIRSF018425	PANTHER:PTHR10682	PANTHER:PTHR10682:SF20	InterPro:PolA_pol_RNA-bd_dom	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase
InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631	TMHMM:TMhelix	UniParc:UPI000296DE83
SEG:seg	:	:	:	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G29920_001]

Coordinates

chr8:+:32139049..32146160

Molecular Weight (calculated)

63249.5 Da

IEP (calculated)

7.360

GRAVY (calculated)

-0.139

Length

557 amino acids

Sequence
(BLAST)

001: MAYALPGERR ITVLPPPPPV CLVDPGTLIL PPPPPVAYLV PLGAVPRPGH QGPVFVQNPV LVPRNHSLPY PPVILRLNPA FLMQMDEQRT RSLFQFMAQE
101: GLEPSPEEEM KRKTAIDQLK QIVLAWIKKV AWQCRLPKDV IPDAGATVLT YGSYGLGVHG PESDIDALCV GPYFATLEED FFIILHSMLE SQTEVSEIHC
201: VKSAKVPLMR FKFNGISIDF PYARIPAISV TESVNVFDPS VLAQVDDTSW RSLSGVRANK RILQLVPNLK NFQSMLRCVK LWARRRGVYS HLFGFFGGIH
301: LAILAAYVCQ RYPNASASAL LCLFFETFSK WPWPEPVVLN DPSIPYRHPD GRSVMPIMMP CSPFEWCHSN ITRSTYKKIV SEFQYGYVLT RLQDPGRMEF
401: RWNNLFEAYP YTTKHTHFLQ ILLTADNDDE LQEWVGWVKS RIRGLLLKLE MVQEYCDPNP TENVDHNITE PNIVFYWGLS PKGNTINIGS LKKDFMKSIN
501: TDQFADENHT HCKLALSIVQ YSQLPKSLRL DAVYSQYLPQ DFVGYDVANE QHRAAAG

Best Arabidopsis Sequence Match ( AT3G06560.1 )
(BLAST)

001: MKKGGGRNKG FPQDDESSIS LRQLMVNEGL IPSLEDEVKR RGVINQLRKI VVRWVKNVAW QHRLPQNQID ATNATILPYG SYGLGVYGSE SDIDALCIGP
101: FFASIAEDFF ISLRDMLKSR REVSELHCVK DAKVPLIRFK FDGILVDLPY AQLRVLSIPN NVDVLNPFFL RDIDETSWKI LSGVRANKCI LQLVPSLELF
201: QSLLRCVKLW AKRRGVYGNL NGFLGGVHMA ILAAFVCGYQ PNATLSSLLA NFFYTFAHWQ WPTPVVLLED TYPSTGAPPG LMPIQLPCGS HQYCNSTITR
301: STFYKIVAEF LLGHNLTKDY LKLNFSWKDL FELYPYANTY TWFTKIHLSA ANQEDLSDWV GWVKSRFRCL LIKIEEVYGI CDPNPTEYVE TYTKQPNIVF
401: YWGLQLRTIN VSDIESVKID FLKNVNSGSF RGTVGRIQLT LVKASQLPKN GECGSNNRSK KVTKTCWRIR EDKQCNNVPV YSKHLPGYVV GYQKMVNREA
501: DGMEVKC

Arabidopsis Description

PAPS3Nuclear poly(A) polymerase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q56XM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.