Factsheet for GSMUA_Achr11P16610_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, plastid

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P15280_001
GSMUA_Achr6P19820_001
GSMUA_Achr8P29920_001
GSMUA_Achr9P30440_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51660.1	GSMUA_Achr6P19820_001	AT1G30460.1	16897494
AT5G51660.1	GSMUA_Achr9P30440_001	AT1G30460.1	16897494
AT5G51660.1	GSMUA_Achr6P19820_001	AT1G30460.1	18479511
AT5G51660.1	GSMUA_Achr9P30440_001	AT1G30460.1	18479511
AT5G51660.1	GSMUA_Achr8P29920_001	AT3G06560.1	16897494
AT5G51660.1	GSMUA_Achr1P15280_001	AT5G23880.1	16897494
AT5G51660.1	GSMUA_Achr1P15280_001	AT5G23880.1	18479511
AT5G51660.1	GSMUA_Achr11P...	AT5G51660.1	16897494
AT5G51660.1	GSMUA_Achr11P...	AT5G51660.1	16897494
AT5G51660.1	GSMUA_Achr11P...	AT5G51660.1	16897494

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d004154_P002	Maize	plasma membrane	61.94	27.33
VIT_16s0022g01860.t01	Wine grape	cytosol, nucleus, plastid	67.91	25.83
KRH09220	Soybean	nucleus	68.66	25.43
KRH38714	Soybean	nucleus	68.28	25.26
AT5G51660.1	Thale cress	cytosol	66.04	24.55
TraesCS2B01G074500.1	Wheat	cytosol	64.93	24.47
CDY46934	Canola	cytosol	65.86	24.38
Bra022557.1-P	Field mustard	cytosol	65.86	24.38
HORVU2Hr1G011580.28	Barley	nucleus	64.74	24.32
TraesCS2D01G060100.3	Wheat	cytosol, nucleus, plastid	64.74	24.23
CDX91600	Canola	cytosol	65.3	24.17
TraesCS2A01G061100.3	Wheat	nucleus	64.74	24.15
Solyc03g007100.2.1	Tomato	nucleus	63.43	23.86
KXG25932	Sorghum	cytosol	63.62	23.68
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	0.75	0.66
GSMUA_Achr11P...	Banana	cytosol	0.0	0.0
KRH04684	Soybean	extracellular	0.0	0.0
Os04t0252200-01	Rice	cytosol, nucleus, plasma membrane	0.0	0.0
Zm00001d004153_P002	Maize	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr11P16610_001	EnsemblPlants:GSMUA_Achr11T16610_001	EnsemblPlantsGene:GSMUA_Achr11G16610_001	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	PANTHER:PTHR10644	PANTHER:PTHR10644:SF2	PFAM:PF10433
UniParc:UPI00029635B5	UniProt:M0RSU1	MapMan:16.2.1.2.1	:	:	:

Description

Cleavage and polyadenylation specificity factor subunit 1 [Source:GMGC_GENE;Acc:GSMUA_Achr11G16610_001]

Coordinates

chr11:+:18307962..18326471

Molecular Weight (calculated)

58771.2 Da

IEP (calculated)

6.301

GRAVY (calculated)

-0.003

Length

536 amino acids

Sequence
(BLAST)

001: MKHVKDFTFV HGYIEPVMVI LHEKEPTWAG RISWKHHTCM ISALSISTTL KQHPMIWSAS NIPHDANKLL AVPSPIGGVL VICANTIHYH SQSATCSLAL
101: NSFATQPEGS SEMPKAKFTV ELDAANVTWL SPDVAMFSSK TGDLLLLTLI YDGRVVQRLE LMKSKASVLT SGITTIGSSF FFLGSRLGDS LLVQYSTGTS
201: GPTSANGKDE VADTEGDLHL AKRLRRTPSD ALQEFASGEE LSLYTTTPDS SETAQKFFSF IVRDSLINVG PLKDFSYGLR INADPNATGI AKQSNYELVC
301: CSGHGKNGAL CVLQQSIRPE LITEVELPGC KGIWSVYHKG SRGHAADSSK TMMEDDEYHA YLIISLETRT MVLETADDLG EVTETVDYYV QGSTIAAGNL
401: FGRRRVVQIF ARGARILDGS YMTQELTFGV HNSELISNSE APVVASVSIA DPYVLLKMTD GSIQLLVGGT IYSCSWSLRF VFRSSNVQMI CPFGSTNYFT
501: FASLYVHLLQ IIPCVCQSRV ENTFQATTKE LNYYVN

Best Arabidopsis Sequence Match ( AT5G51660.2 )
(BLAST)

0001: MSFAAYKMMH WPTGVENCAS GYITHSLSDS TLQIPIVSVH DDIEAEWPNP KRGIGPLPNV VITAANILEV YIVRAQEEGN TQELRNPKLA KRGGVMDGVY
0101: GVSLELVCHY RLHGNVESIA VLPMGGGNSS KGRDSIILTF RDAKISVLEF DDSIHSLRMT SMHCFEGPDW LHLKRGRESF PRGPLVKVDP QGRCGGVLVY
0201: GLQMIILKTS QVGSGLVGDD DAFSSGGTVS ARVESSYIIN LRDLEMKHVK DFVFLHGYIE PVIVILQEEE HTWAGRVSWK HHTCVLSALS INSTLKQHPV
0301: IWSAINLPHD AYKLLAVPSP IGGVLVLCAN TIHYHSQSAS CALALNNYAS SADSSQELPA SNFSVELDAA HGTWISNDVA LLSTKSGELL LLTLIYDGRA
0401: VQRLDLSKSK ASVLASDITS VGNSLFFLGS RLGDSLLVQF SCRSGPAASL PGLRDEDEDI EGEGHQAKRL RMTSDTFQDT IGNEELSLFG STPNNSDSAQ
0501: KSFSFAVRDS LVNVGPVKDF AYGLRINADA NATGVSKQSN YELVCCSGHG KNGALCVLRQ SIRPEMITEV ELPGCKGIWT VYHKSSRGHN ADSSKMAADE
0601: DEYHAYLIIS LEARTMVLET ADLLTEVTES VDYYVQGRTI AAGNLFGRRR VIQVFEHGAR ILDGSFMNQE LSFGASNSES NSGSESSTVS SVSIADPYVL
0701: LRMTDDSIRL LVGDPSTCTV SISSPSVLEG SKRKISACTL YHDKGPEPWL RKASTDAWLS SGVGEAVDSV DGGPQDQGDI YCVVCYESGA LEIFDVPSFN
0801: CVFSVDKFAS GRRHLSDMPI HELEYELNKN SEDNTSSKEI KNTRVVELAM QRWSGHHTRP FLFAVLADGT ILCYHAYLFD GVDSTKAENS LSSENPAALN
0901: SSGSSKLRNL KFLRIPLDTS TREGTSDGVA SQRITMFKNI SGHQGFFLSG SRPGWCMLFR ERLRFHSQLC DGSIAAFTVL HNVNCNHGFI YVTAQGVLKI
1001: CQLPSASIYD NYWPVQKIPL KATPHQVTYY AEKNLYPLIV SYPVSKPLNQ VLSSLVDQEA GQQLDNHNMS SDDLQRTYTV EEFEIQILEP ERSGGPWETK
1101: AKIPMQTSEH ALTVRVVTLL NASTGENETL LAVGTAYVQG EDVAARGRVL LFSFGKNGDN SQNVVTEVYS RELKGAISAV ASIQGHLLIS SGPKIILHKW
1201: NGTELNGVAF FDAPPLYVVS MNVVKSFILL GDVHKSIYFL SWKEQGSQLS LLAKDFESLD CFATEFLIDG STLSLAVSDE QKNIQILYYI PKKDVEVSNL
1301: ALLLSHIVFT W

Arabidopsis Description

CPSF160Cleavage and polyadenylation specificity factor subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGR0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.