Factsheet for GSMUA_Achr9P30440_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P15280_001
GSMUA_Achr3P07540_001
GSMUA_Achr4P14570_001
GSMUA_Achr6P18930_001
GSMUA_Achr6P19820_001
GSMUA_Achr6P35010_001
GSMUA_Achr7P27630_001
GSMUA_Achr8P29920_001
GSMUA_Achr9P17150_001
GSMUA_Achr9P30440_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30460.1	GSMUA_Achr9P17150_001	AT1G17760.1	18479511
AT1G30460.1	GSMUA_Achr6P19820_001	AT1G30460.1	18479511
AT1G30460.1	GSMUA_Achr9P30440_001	AT1G30460.1	18479511
AT1G30460.1	GSMUA_Achr6P18930_001	AT1G66500.1	18479511
AT1G30460.1	GSMUA_Achr3P07540_001	AT2G01730.1	16897494
AT1G30460.1	GSMUA_Achr8P29920_001	AT3G06560.1	16897494
AT1G30460.1	GSMUA_Achr8P29920_001	AT3G06560.1	18479511
AT1G30460.1	GSMUA_Achr6P18930_001	AT4G04885.1	18479511
AT1G30460.1	GSMUA_AchrUn_...	AT4G25550.1	18479511
AT1G30460.1	GSMUA_Achr1P15280_001	AT5G23880.1	16897494
AT1G30460.1	GSMUA_Achr1P15280_001	AT5G23880.1	18479511
AT1G30460.1	GSMUA_Achr11P...	AT5G51660.1	16897494
AT1G30460.1	GSMUA_Achr11P...	AT5G51660.1	16897494
AT1G30460.1	GSMUA_Achr11P...	AT5G51660.1	16897494
AT1G30460.1	GSMUA_Achr11P...	AT5G51660.1	18479511
AT1G30460.1	GSMUA_Achr11P...	AT5G51660.1	18479511
AT1G30460.1	GSMUA_Achr11P...	AT5G51660.1	18479511
AT1G30460.1	GSMUA_Achr4P14570_001	AT5G58040.1	16282318
AT1G30460.1	GSMUA_Achr7P27630_001	AT5G58040.1	16282318
AT1G30460.1	GSMUA_Achr4P14570_001	AT5G58040.1	18479511
AT1G30460.1	GSMUA_Achr7P27630_001	AT5G58040.1	18479511
AT1G30460.1	GSMUA_Achr6P35010_001	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P19820_001	Banana	nucleus	77.47	73.55
VIT_10s0003g04600.t01	Wine grape	nucleus	65.14	63.6
KRH36762	Soybean	nucleus	63.47	61.23
AT1G30460.1	Thale cress	nucleus	58.6	61.01
Zm00001d014378_P001	Maize	cytosol, nucleus, peroxisome	59.21	60.78
EER88812	Sorghum	cytosol, nucleus, peroxisome	59.67	60.78
CDX98205	Canola	nucleus	49.92	60.29
HORVU7Hr1G106340.5	Barley	cytosol	59.51	60.25
KRH11760	Soybean	nucleus	63.32	60.2
TraesCS7D01G450100.1	Wheat	nucleus	59.51	60.15
TraesCS7B01G363200.2	Wheat	nucleus	59.67	60.03
TraesCS7A01G461800.1	Wheat	nucleus	59.36	60.0
Solyc02g021760.2.1	Tomato	nucleus	61.8	58.93
Bra010767.1-P	Field mustard	nucleus	56.47	58.89
Zm00001d036594_P001	Maize	cytosol, nucleus, peroxisome	57.53	58.42
Bra014881.1-P	Field mustard	nucleus	51.14	57.93
Solyc02g070240.2.1	Tomato	nucleus	58.6	57.38
Os06t0677700-00	Rice	cytosol, nucleus, plasma membrane	59.82	57.29
CDX77591	Canola	nucleus	50.68	55.97
CDY12057	Canola	cytosol, nucleus, peroxisome	54.19	54.27
PGSC0003DMT400054373	Potato	cytosol, nucleus, plastid	21.92	54.14
Zm00001d014379_P001	Maize	nucleus	19.63	52.44
Zm00001d036595_P001	Maize	nucleus	19.79	51.79

Protein Annotations

MapMan:16.2.1.2.5	Gene3D:3.10.590.10	Gene3D:4.10.1000.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr9G30440_001	EnsemblPlants:GSMUA_Achr9P30440_001	EnsemblPlants:GSMUA_Achr9T30440_001	InterPro:IPR000571
InterPro:IPR007275	UniProt:M0U4V1	PFAM:PF04146	PFscan:PS50103	PFscan:PS50882	PANTHER:PTHR12357
PANTHER:PTHR12357:SF59	SMART:SM00356	SUPFAM:SSF90229	UniParc:UPI000296CD7A	InterPro:YTH_domain	InterPro:Znf_CCCH
InterPro:Znf_CCCH_sf	SEG:seg	:	:	:	:

Description

Zinc finger CCCH domain-containing protein 45 [Source:GMGC_GENE;Acc:GSMUA_Achr9G30440_001]

Coordinates

chr9:-:33690605..33701960

Molecular Weight (calculated)

72425.2 Da

IEP (calculated)

7.016

GRAVY (calculated)

-0.709

Length

657 amino acids

Sequence
(BLAST)

001: MDEPEGSLNF DFEGGLDVAA PSVAAVAASG PLAPSDPTAA AASAGASSPS GTADRMAVAG GNVSGRRSFR QTVCRHWLRG LCMKGDACGF LHQYDKDRMP
101: VCRFFRQYGE CREQDCVYKH TNEDIKECNM YKFGFCPNGP DCRYRHAKLP GPPPPVEEVL QKIQHLNSAY GSSNRFYHHR NNNNSYNQQP DKNQLSSTPG
201: LPNQNTGQQQ QQQQQLPIPS LENQVPSISN ALSNQTVRTA SPLPQGQSRC LSCMNAVLSI MYFIVKSCNR ENLEISVQQG MWATQRSNEA KLNEAFESTE
301: NVILIFSINK TRHFQGCGKM TSRIGGFVGG GNWKYSHGTA HYGRNFSVKW LKLCELSFNK THHLRNPYND NLPVKISRDC QELEPFIGEQ LASLLYLEPD
401: SELMAMLVAA ESKRDEEKAK GGGADEATDN PDIVLFEDNE EEESEEEESE EDDESGQAAH GRGRGRGMMW QPHMPLVRGG RPMLGVRGFP PIMMGADGFG
501: YGDGFSTPDL FGPRIFPQFG GPRFSGDFSA GLVFSGRPPQ PGAVFPMGNI GMMMGPGRAP FMGGMPMAGM GRANRPVGVP PFLHPPPAPP LNSRAAKRDH
601: RRPVSDRNDR ASDHKYGPGK SFQNESEKSM DEIAPRRSRH SDGKWKRHVS EGETTLE

Best Arabidopsis Sequence Match ( AT1G30460.1 )
(BLAST)

001: MEDADGLSFD FEGGLDSGPV QNTASVPVAP PENSSSAAVN VAPTYDHSSA TVAGAGRGRS FRQTVCRHWL RGLCMKGDAC GFLHQFDKAR MPICRFFRLY
101: GECREQDCVY KHTNEDIKEC NMYKLGFCPN GPDCRYRHAK LPGPPPPVEE VLQKIQQLTT YNYGTNRLYQ ARNVAPQLQD RPQGQVPMQG QPQESGNLQQ
201: QQQQQPQQSQ HQVSQTLIPN PADQTNRTSH PLPQGVNRYF VVKSNNRENF ELSVQQGVWA TQRSNEAKLN EAFDSVENVI LIFSVNRTRH FQGCAKMTSR
301: IGGYIGGGNW KHEHGTAQYG RNFSVKWLKL CELSFHKTRN LRNPYNENLP VKISRDCQEL EPSVGEQLAS LLYLEPDSEL MAISIAAEAK REEEKAKGVN
401: PESRAENPDI VPFEDNEEEE EEEDESEEEE ESMAGGPQGR GRGRGIMWPP QMPLGRGIRP MPGMGGFPLG VMGPGDAFPY GPGGYNGMPD PFGMGPRPFG
501: PYGPRFGGDF RGPVPGMMFP GRPPQQFPHG GYGMMGGGRG PHMGGMGNAP RGGRPMYYPP ATSSARPGPS NRKTPERSDE RGVSGDQQNQ DASHDMEQFE
601: VGNSLRNEES ESEDEDEAPR RSRHGEGKKR R

Arabidopsis Description

CPSF3030-kDa cleavage and polyadenylation specificity factor 30 [Source:UniProtKB/Swiss-Prot;Acc:A9LNK9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.