Factsheet for GSMUA_Achr6P19820_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
golgi 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	golgi
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P15280_001
GSMUA_Achr3P07540_001
GSMUA_Achr4P14570_001
GSMUA_Achr6P18930_001
GSMUA_Achr6P19820_001
GSMUA_Achr6P35010_001
GSMUA_Achr7P27630_001
GSMUA_Achr8P29920_001
GSMUA_Achr9P17150_001
GSMUA_Achr9P30440_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30460.1	GSMUA_Achr9P17150_001	AT1G17760.1	18479511
AT1G30460.1	GSMUA_Achr6P19820_001	AT1G30460.1	18479511
AT1G30460.1	GSMUA_Achr9P30440_001	AT1G30460.1	18479511
AT1G30460.1	GSMUA_Achr6P18930_001	AT1G66500.1	18479511
AT1G30460.1	GSMUA_Achr3P07540_001	AT2G01730.1	16897494
AT1G30460.1	GSMUA_Achr8P29920_001	AT3G06560.1	16897494
AT1G30460.1	GSMUA_Achr8P29920_001	AT3G06560.1	18479511
AT1G30460.1	GSMUA_Achr6P18930_001	AT4G04885.1	18479511
AT1G30460.1	GSMUA_AchrUn_...	AT4G25550.1	18479511
AT1G30460.1	GSMUA_Achr1P15280_001	AT5G23880.1	16897494
AT1G30460.1	GSMUA_Achr1P15280_001	AT5G23880.1	18479511
AT1G30460.1	GSMUA_Achr11P...	AT5G51660.1	16897494
AT1G30460.1	GSMUA_Achr11P...	AT5G51660.1	16897494
AT1G30460.1	GSMUA_Achr11P...	AT5G51660.1	16897494
AT1G30460.1	GSMUA_Achr11P...	AT5G51660.1	18479511
AT1G30460.1	GSMUA_Achr11P...	AT5G51660.1	18479511
AT1G30460.1	GSMUA_Achr11P...	AT5G51660.1	18479511
AT1G30460.1	GSMUA_Achr4P14570_001	AT5G58040.1	16282318
AT1G30460.1	GSMUA_Achr7P27630_001	AT5G58040.1	16282318
AT1G30460.1	GSMUA_Achr4P14570_001	AT5G58040.1	18479511
AT1G30460.1	GSMUA_Achr7P27630_001	AT5G58040.1	18479511
AT1G30460.1	GSMUA_Achr6P35010_001	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P30440_001	Banana	nucleus	73.55	77.47
VIT_10s0003g04600.t01	Wine grape	nucleus	64.74	66.57
EER88812	Sorghum	cytosol, nucleus, peroxisome	61.56	66.05
HORVU7Hr1G106340.5	Barley	cytosol	61.85	65.95
KRH36762	Soybean	nucleus	64.88	65.93
TraesCS7B01G363200.2	Wheat	nucleus	62.14	65.85
TraesCS7A01G461800.1	Wheat	nucleus	61.85	65.85
Zm00001d014378_P001	Maize	cytosol, nucleus, peroxisome	60.69	65.62
TraesCS7D01G450100.1	Wheat	nucleus	61.56	65.54
KRH11760	Soybean	nucleus	64.02	64.11
Solyc02g070240.2.1	Tomato	nucleus	61.42	63.34
Os06t0677700-00	Rice	cytosol, nucleus, plasma membrane	61.71	62.24
Zm00001d036594_P001	Maize	cytosol, nucleus, peroxisome	58.09	62.13
AT1G30460.1	Thale cress	nucleus	56.36	61.81
CDX98205	Canola	nucleus	48.12	61.21
Solyc02g021760.2.1	Tomato	nucleus	60.69	60.96
Bra010767.1-P	Field mustard	nucleus	54.34	59.68
Bra014881.1-P	Field mustard	nucleus	49.57	59.14
CDX77591	Canola	nucleus	48.27	56.13
Zm00001d014379_P001	Maize	nucleus	19.8	55.69
CDY12057	Canola	cytosol, nucleus, peroxisome	52.17	55.03
Zm00001d036595_P001	Maize	nucleus	19.51	53.78
PGSC0003DMT400054373	Potato	cytosol, nucleus, plastid	20.38	53.01

Protein Annotations

MapMan:16.2.1.2.5	Gene3D:3.10.590.10	Gene3D:4.10.1000.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr6G19820_001	EnsemblPlants:GSMUA_Achr6P19820_001	EnsemblPlants:GSMUA_Achr6T19820_001	InterPro:IPR000571
InterPro:IPR007275	UniProt:M0T8I0	PFAM:PF04146	PFscan:PS50103	PFscan:PS50882	PANTHER:PTHR12357
PANTHER:PTHR12357:SF59	SMART:SM00356	SUPFAM:SSF90229	UniParc:UPI0002955BDB	InterPro:YTH_domain	InterPro:Znf_CCCH
InterPro:Znf_CCCH_sf	SEG:seg	:	:	:	:

Description

Zinc finger CCCH domain-containing protein 45 [Source:GMGC_GENE;Acc:GSMUA_Achr6G19820_001]

Coordinates

chr6:+:14132528..14152707

Molecular Weight (calculated)

75960.0 Da

IEP (calculated)

6.432

GRAVY (calculated)

-0.750

Length

692 amino acids

Sequence
(BLAST)

001: MEDPEGALSF DFEGGLDSAA PAAAAAPLAP ADPTAAAATA GAVPHSGAAD PIAVAAGNVP GRRSFRQTVC RHWLRGLCMK GDACGFLHQY DKERMPVCRF
101: FRLYGECREQ DCVYKHTNED IKECNMYKLG FCPNGPDCRY RHAKLPGPPP PVEEVLQKIQ HLGSFGYGSS NRFYHHRNTN YNQQLDKNQL SSAPGLHNQN
201: TAVKPASSFE PSDVKPSQSL QQQQQQQQQP PPPPTENQVP GIMNVSSNQS TRTASPLPQG QSRYFIVKSC NRENLEISVQ QGVWATQRSN EPKLNEAFES
301: TENVILIFSI NKTRHFQGCA KMTSRIGGLV GGGNWKYSHG TAHYGRNFSV KWLKLCELSF NKTHHLRNPY NDNLPVKISR DCQELEPFIG EQLASLLYLE
401: PDGELMAMLI AAESKREEEK AKGVGADEAA DNPDIVLFED NEEEEEEESE EEDESSGQAT QGRGRGRGMM WQPHMPLVRG VRPVVGVRGF PPVMMGADGF
501: GYADGFAAPD LFGPRIFPPF GGPRFSGDFS AGHMSGLVFP GRPPQPGAVY PMGNLGMMMG PGRAPYMGGM PMAGIGRSNR PVGVPPFLHP PPPLNNRAAK
601: RDHRRPVSDR NDRYEAGSDQ GNRGQEMVGN VGGVDDDTGY WQGEKAPEDR YGAGRSLQND ESESEDEMAP RRSRHGNGKR KHRVSEGEAA LD

Best Arabidopsis Sequence Match ( AT1G30460.1 )
(BLAST)

001: MEDADGLSFD FEGGLDSGPV QNTASVPVAP PENSSSAAVN VAPTYDHSSA TVAGAGRGRS FRQTVCRHWL RGLCMKGDAC GFLHQFDKAR MPICRFFRLY
101: GECREQDCVY KHTNEDIKEC NMYKLGFCPN GPDCRYRHAK LPGPPPPVEE VLQKIQQLTT YNYGTNRLYQ ARNVAPQLQD RPQGQVPMQG QPQESGNLQQ
201: QQQQQPQQSQ HQVSQTLIPN PADQTNRTSH PLPQGVNRYF VVKSNNRENF ELSVQQGVWA TQRSNEAKLN EAFDSVENVI LIFSVNRTRH FQGCAKMTSR
301: IGGYIGGGNW KHEHGTAQYG RNFSVKWLKL CELSFHKTRN LRNPYNENLP VKISRDCQEL EPSVGEQLAS LLYLEPDSEL MAISIAAEAK REEEKAKGVN
401: PESRAENPDI VPFEDNEEEE EEEDESEEEE ESMAGGPQGR GRGRGIMWPP QMPLGRGIRP MPGMGGFPLG VMGPGDAFPY GPGGYNGMPD PFGMGPRPFG
501: PYGPRFGGDF RGPVPGMMFP GRPPQQFPHG GYGMMGGGRG PHMGGMGNAP RGGRPMYYPP ATSSARPGPS NRKTPERSDE RGVSGDQQNQ DASHDMEQFE
601: VGNSLRNEES ESEDEDEAPR RSRHGEGKKR R

Arabidopsis Description

CPSF3030-kDa cleavage and polyadenylation specificity factor 30 [Source:UniProtKB/Swiss-Prot;Acc:A9LNK9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.