Factsheet for GSMUA_Achr1P15280_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P15280_001
GSMUA_Achr3P07540_001
GSMUA_Achr6P15580_001
GSMUA_Achr6P19820_001
GSMUA_Achr6P35010_001
GSMUA_Achr9P30440_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23880.1	GSMUA_Achr6P19820_001	AT1G30460.1	16897494
AT5G23880.1	GSMUA_Achr9P30440_001	AT1G30460.1	16897494
AT5G23880.1	GSMUA_Achr6P19820_001	AT1G30460.1	18479511
AT5G23880.1	GSMUA_Achr9P30440_001	AT1G30460.1	18479511
AT5G23880.1	GSMUA_Achr3P07540_001	AT2G01730.1	16897494
AT5G23880.1	GSMUA_Achr3P07540_001	AT2G01730.1	18479511
AT5G23880.1	GSMUA_AchrUn_...	AT4G10500.1	21798944
AT5G23880.1	GSMUA_Achr6P15580_001	AT5G01400.1	17008405
AT5G23880.1	GSMUA_Achr1P15280_001	AT5G23880.1	16897494
AT5G23880.1	GSMUA_Achr11P...	AT5G51660.1	16897494
AT5G23880.1	GSMUA_Achr11P...	AT5G51660.1	16897494
AT5G23880.1	GSMUA_Achr11P...	AT5G51660.1	16897494
AT5G23880.1	GSMUA_Achr11P...	AT5G51660.1	17008405
AT5G23880.1	GSMUA_Achr11P...	AT5G51660.1	17008405
AT5G23880.1	GSMUA_Achr11P...	AT5G51660.1	17008405
AT5G23880.1	GSMUA_Achr11P...	AT5G51660.1	18479511
AT5G23880.1	GSMUA_Achr11P...	AT5G51660.1	18479511
AT5G23880.1	GSMUA_Achr11P...	AT5G51660.1	18479511
AT5G23880.1	GSMUA_Achr6P35010_001	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0050g00590.t01	Wine grape	cytosol	79.59	79.05
KRH38460	Soybean	cytosol	77.69	77.27
Os09t0569400-01	Rice	cytosol	77.01	76.69
KRH08941	Soybean	cytosol, nucleus	76.87	76.56
TraesCS5B01G462500.2	Wheat	cytosol	76.73	76.32
TraesCS5D01G464200.1	Wheat	cytosol	76.6	76.29
TraesCS5A01G453700.5	Wheat	cytosol	76.33	75.91
EER93127	Sorghum	cytosol	75.92	75.61
KRH30256	Soybean	cytosol	68.98	75.0
Solyc03g025540.2.1	Tomato	nucleus	74.83	74.42
CDX80392	Canola	cytosol	72.79	72.4
Bra009712.1-P	Field mustard	cytosol	72.65	72.26
CDX88053	Canola	cytosol	72.38	71.99
Zm00001d044552_P006	Maize	cytosol, plasma membrane	74.83	71.8
AT5G23880.1	Thale cress	cytosol	71.97	71.58
HORVU5Hr1G109220.1	Barley	plastid	76.73	71.57
KRH30262	Soybean	cytosol	49.12	64.81
GSMUA_Achr3P07540_001	Banana	cytosol	17.41	19.42
GSMUA_Achr6P00420_001	Banana	cytosol, mitochondrion	15.24	17.36

Protein Annotations

MapMan:16.2.1.2.2	Gene3D:3.60.15.10	InterPro:Beta_Casp	InterPro:CPSF2	InterPro:CPSF2_MBL	ncoils:Coil
InterPro:Cpsf2_C	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005737	GO:GO:0005847
GO:GO:0006139	GO:GO:0006378	GO:GO:0006379	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152
GO:GO:0009506	GO:GO:0009987	GO:GO:0035194	GO:GO:0040029	EnsemblPlantsGene:GSMUA_Achr1G15280_001	EnsemblPlants:GSMUA_Achr1P15280_001
EnsemblPlants:GSMUA_Achr1T15280_001	InterPro:IPR036866	UniProt:M0S036	InterPro:Metallo-B-lactamas	PFAM:PF07521	PFAM:PF10996
PFAM:PF13299	PFAM:PF16661	PANTHER:PTHR11203	PANTHER:PTHR11203:SF5	InterPro:RMMBL	InterPro:RibonucZ/Hydroxyglut_hydro
SMART:SM01027	SUPFAM:SSF56281	UniParc:UPI000294C54A	SEG:seg	:	:

Description

Cleavage and polyadenylation specificity factor subunit 2 [Source:GMGC_GENE;Acc:GSMUA_Achr1G15280_001]

Coordinates

chr1:-:11490890..11509156

Molecular Weight (calculated)

81934.1 Da

IEP (calculated)

5.382

GRAVY (calculated)

-0.110

Length

735 amino acids

Sequence
(BLAST)

001: MGTSVQVTPL CGVYSENPLC YLLSIDGFNF LMDCGWNDHF DPNLLQPLSR VSTKVDAVLL SHPDVLHLGA LPYAMKHLGL TSPVYSTEPV YRLGLLTMYD
101: HYLSRRQISD FDLFTLDDID TAFQNVTRLT YSQSCHLSDK GEGIVIAPHV TGHLLGGTVW KITKDGEDVV YAVDFNHRKE RHLNGTVLES FVRPAVLITD
201: AYNALNNQLY KRQRDQEFIE AILKALRADG NVLLPVETAG RALELILILE HYWAQQHLSF PIFFLTNVAT STIDYVKSFL EWMSDSIAKS FEHTRDNAFL
301: LKHVNLIINK SELEKIAEVP KVVLASMASL EVGFSHDIFV EWATEAKNLV LFTEKGQFGT LARMLQVDPP PKAVKVTLSK RVPLVGDELK AYEEEQNRIK
401: KEEALKVTLS KEEELRASHG SDANVADPMV IDVSSSHISS ASGSRSSGHL DIFIDGFIPP ATSVAPMFPF FETKAEWDDY GEVINPDDYI MKEEDQDQAL
501: MQGDLDGKLE EGSAHLLLDS APSKVISNEI TVQVKCGLTY MDFEGRSDGR SVKSIISHVA PLKLVLVHGS AEATEHLKQH CIKHVCPHVY APHIEETIDV
601: TSDLCAYKVQ LSERLMSNVL LKKLGDYEIA WVDAEVGKTN DMLTLLPLSS APPTHKSVLI GDLKLADFKQ FLASQGVQVE FTGGALRCGE HVTLRKISDA
701: SQKGGTGGQQ ILIEGPLTEE YYKIRKHLYS QFYLL

Best Arabidopsis Sequence Match ( AT5G23880.1 )
(BLAST)

001: MGTSVQVTPL CGVYNENPLS YLVSIDGFNF LIDCGWNDLF DTSLLEPLSR VASTIDAVLL SHPDTLHIGA LPYAMKQLGL SAPVYATEPV HRLGLLTMYD
101: QFLSRKQVSD FDLFTLDDID SAFQNVIRLT YSQNYHLSGK GEGIVIAPHV AGHMLGGSIW RITKDGEDVI YAVDYNHRKE RHLNGTVLQS FVRPAVLITD
201: AYHALYTNQT ARQQRDKEFL DTISKHLEVG GNVLLPVDTA GRVLELLLIL EQHWSQRGFS FPIYFLTYVS SSTIDYVKSF LEWMSDSISK SFETSRDNAF
301: LLRHVTLLIN KTDLDNAPPG PKVVLASMAS LEAGFAREIF VEWANDPRNL VLFTETGQFG TLARMLQSAP PPKFVKVTMS KRVPLAGEEL IAYEEEQNRL
401: KREEALRASL VKEEETKASH GSDDNSSEPM IIDTKTTHDV IGSHGPAYKD ILIDGFVPPS SSVAPMFPYY DNTSEWDDFG EIINPDDYVI KDEDMDRGAM
501: HNGGDVDGRL DEATASLMLD TRPSKVMSNE LIVTVSCSLV KMDYEGRSDG RSIKSMIAHV SPLKLVLVHA IAEATEHLKQ HCLNNICPHV YAPQIEETVD
601: VTSDLCAYKV QLSEKLMSNV IFKKLGDSEV AWVDSEVGKT ERDMRSLLPM PGAASPHKPV LVGDLKIADF KQFLSSKGVQ VEFAGGGALR CGEYVTLRKV
701: GPTGQKGGAS GPQQILIEGP LCEDYYKIRD YLYSQFYLL

Arabidopsis Description

CPSF100Cleavage and polyadenylation specificity factor subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKF9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.