Factsheet for HORVU5Hr1G109220.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G011580.28
HORVU2Hr1G013790.2
HORVU2Hr1G093950.12
HORVU5Hr1G060570.5
HORVU5Hr1G060590.1
HORVU5Hr1G095960.3
HORVU5Hr1G109220.1
HORVU7Hr1G106340.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23880.1	HORVU7Hr1G106340.5	AT1G30460.1	16897494
AT5G23880.1	HORVU7Hr1G106340.5	AT1G30460.1	18479511
AT5G23880.1	HORVU5Hr1G060570.5	AT2G01730.1	16897494
AT5G23880.1	HORVU5Hr1G060590.1	AT2G01730.1	16897494
AT5G23880.1	HORVU5Hr1G060570.5	AT2G01730.1	18479511
AT5G23880.1	HORVU5Hr1G060590.1	AT2G01730.1	18479511
AT5G23880.1	HORVU2Hr1G093950.12	AT4G10500.1	21798944
AT5G23880.1	HORVU2Hr1G013790.2	AT5G01400.1	17008405
AT5G23880.1	HORVU5Hr1G109220.1	AT5G23880.1	16897494
AT5G23880.1	HORVU2Hr1G011580.28	AT5G51660.1	16897494
AT5G23880.1	HORVU2Hr1G011580.28	AT5G51660.1	17008405
AT5G23880.1	HORVU2Hr1G011580.28	AT5G51660.1	18479511
AT5G23880.1	HORVU5Hr1G095960.3	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G453700.5	Wheat	cytosol	90.74	96.75
TraesCS5D01G464200.1	Wheat	cytosol	90.61	96.75
TraesCS5B01G462500.2	Wheat	cytosol	90.48	96.48
Os09t0569400-01	Rice	cytosol	83.38	89.02
EER93127	Sorghum	cytosol	81.98	87.53
Zm00001d044552_P006	Maize	cytosol, plasma membrane	80.96	83.29
GSMUA_Achr1P15280_001	Banana	cytosol	71.57	76.73
VIT_16s0050g00590.t01	Wine grape	cytosol	69.67	74.19
KRH38460	Soybean	cytosol	68.15	72.67
KRH08941	Soybean	cytosol, nucleus	67.51	72.09
Solyc03g025540.2.1	Tomato	nucleus	66.37	70.77
CDX80392	Canola	cytosol	66.24	70.64
Bra009712.1-P	Field mustard	cytosol	66.24	70.64
CDX88053	Canola	cytosol	66.12	70.5
KRH30256	Soybean	cytosol	60.41	70.41
AT5G23880.1	Thale cress	cytosol	65.36	69.69
KRH30262	Soybean	cytosol	43.78	61.94
HORVU5Hr1G060590.1	Barley	cytosol	6.73	26.77
HORVU5Hr1G060570.5	Barley	cytosol	14.59	20.57
HORVU5Hr1G123370.3	Barley	cytosol	15.36	17.95
HORVU5Hr1G088510.1	Barley	mitochondrion, plastid	14.09	15.72

Protein Annotations

MapMan:16.2.1.2.2	Gene3D:3.40.50.10890	Gene3D:3.60.15.10	UniProt:A0A287SNQ0	InterPro:Beta_Casp	InterPro:CPSF2
InterPro:CPSF2_MBL	ncoils:Coil	InterPro:Cpsf2_C	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005737	GO:GO:0005847	GO:GO:0006139	GO:GO:0006378	GO:GO:0006379	GO:GO:0006397
GO:GO:0008150	GO:GO:0008152	GO:GO:0009506	GO:GO:0009987	GO:GO:0035194	GO:GO:0040029
EnsemblPlantsGene:HORVU5Hr1G109220	EnsemblPlants:HORVU5Hr1G109220.1	InterPro:IPR036866	InterPro:Metallo-B-lactamas	PFAM:PF07521	PFAM:PF10996
PFAM:PF13299	PFAM:PF16661	PANTHER:PTHR11203	PANTHER:PTHR11203:SF5	InterPro:RMMBL	InterPro:RibonucZ/Hydroxyglut_hydro
SMART:SM00849	SMART:SM01027	SUPFAM:SSF56281	UniParc:UPI000B473A00	SEG:seg	:

Description

Cleavage and polyadenylation specificity factor subunit 2 [Source:UniProtKB/TrEMBL;Acc:A0A287SNQ0]

Coordinates

chrchr5H:-:629323875..629331245

Molecular Weight (calculated)

86436.4 Da

IEP (calculated)

5.143

GRAVY (calculated)

-0.106

Length

788 amino acids

Sequence
(BLAST)

001: SSTYTPARPS STYTPARPSS TYTPAERLPS TSNPLEPPAP LAVAAAAVEG MGTSVQVTPL SGAYGEGPLC YLLAVDGFRF LLDCGWTDHC DPALLQPLAR
101: VAPTIDAVLL SHPDMMHLGA LPYAIKHLGL SAPVYATEPV YRLGLLTMYD YFLSRWQVAD FDLFSLDDID AAFQNVARLK YSQNHLLKDK GEGIVIAPHV
201: SGHLLGGTVW KITKDGEDVV YAVDFNHRKE RHLNGTTLGS FVRPAVLITD AYNALNNQVY KRQQDQDFID SMVKVLSGGG SVLLPVDTAG RVLELLLTME
301: QYWAQRHLVY PIYFLTNVST STVDFVKSFL EWMSDSISKS FEHTRDNAFL LRHVSLIINK EELEKLGDAP KVVLASMSSL EVGFSHDIFV EMANEAKNLV
401: LFTEKGQFGT LARMLQVDPP PKAVKVTMSK RVPLVGDELK AYEEEQERIK KEEVLKASLS KEKELKASHE SNAKASDPMV VDASLSRKSS NAGSHVGGNV
501: DILIDGFVSP ATSIAPMFPF FENTADWDDF GEVINPDDYM MKQDEVDNNM MLGVGDGMDG KLDEGSARLL LDSAPSKVIS NELTVQVKCS LAYMDFEGRS
601: DGRSVKSVIA HVAPLKLVLV HGSAEATEHL KMHCAKNSDL HVYAPQLEET IDVTSDLCAY KVQLSEKLMS NVISKKLGEH EIAWVDAGVG KADEKLSLVP
701: PSSIPAAHNS VLVGDLKLAD FKQFLANKGL QVEFAGGALR CGEYITVRKI GDSNQKGSTG SQQIVIEGPL CEDYYKIREL LYSQFFLL

Best Arabidopsis Sequence Match ( AT5G23880.1 )
(BLAST)

001: MGTSVQVTPL CGVYNENPLS YLVSIDGFNF LIDCGWNDLF DTSLLEPLSR VASTIDAVLL SHPDTLHIGA LPYAMKQLGL SAPVYATEPV HRLGLLTMYD
101: QFLSRKQVSD FDLFTLDDID SAFQNVIRLT YSQNYHLSGK GEGIVIAPHV AGHMLGGSIW RITKDGEDVI YAVDYNHRKE RHLNGTVLQS FVRPAVLITD
201: AYHALYTNQT ARQQRDKEFL DTISKHLEVG GNVLLPVDTA GRVLELLLIL EQHWSQRGFS FPIYFLTYVS SSTIDYVKSF LEWMSDSISK SFETSRDNAF
301: LLRHVTLLIN KTDLDNAPPG PKVVLASMAS LEAGFAREIF VEWANDPRNL VLFTETGQFG TLARMLQSAP PPKFVKVTMS KRVPLAGEEL IAYEEEQNRL
401: KREEALRASL VKEEETKASH GSDDNSSEPM IIDTKTTHDV IGSHGPAYKD ILIDGFVPPS SSVAPMFPYY DNTSEWDDFG EIINPDDYVI KDEDMDRGAM
501: HNGGDVDGRL DEATASLMLD TRPSKVMSNE LIVTVSCSLV KMDYEGRSDG RSIKSMIAHV SPLKLVLVHA IAEATEHLKQ HCLNNICPHV YAPQIEETVD
601: VTSDLCAYKV QLSEKLMSNV IFKKLGDSEV AWVDSEVGKT ERDMRSLLPM PGAASPHKPV LVGDLKIADF KQFLSSKGVQ VEFAGGGALR CGEYVTLRKV
701: GPTGQKGGAS GPQQILIEGP LCEDYYKIRD YLYSQFYLL

Arabidopsis Description

CPSF100Cleavage and polyadenylation specificity factor subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKF9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.