Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G537400.1 | Wheat | cytosol | 98.07 | 95.52 |
| TraesCS4A01G324800.1 | Wheat | cytosol | 98.07 | 95.52 |
| TraesCS5D01G555600.1 | Wheat | cytosol | 97.92 | 95.38 |
| Zm00001d034876_P001 | Maize | plastid | 91.54 | 88.52 |
| Os03t0852900-01 | Rice | plastid | 91.84 | 88.43 |
| EER90498 | Sorghum | plastid | 90.65 | 87.91 |
| Zm00001d012831_P001 | Maize | plastid | 89.02 | 86.46 |
| HORVU5Hr1G088510.1 | Barley | mitochondrion, plastid | 86.8 | 82.86 |
| GSMUA_Achr6P00420_001 | Banana | cytosol, mitochondrion | 78.04 | 81.55 |
| VIT_12s0035g00190.t01 | Wine grape | cytosol | 82.34 | 79.97 |
| VIT_12s0035g00030.t01 | Wine grape | cytosol, plasma membrane, plastid | 81.31 | 79.08 |
| CDY03781 | Canola | cytosol | 79.08 | 77.13 |
| Bra031460.1-P | Field mustard | cytosol | 79.23 | 76.95 |
| CDY68459 | Canola | cytosol | 79.23 | 76.95 |
| AT1G61010.4 | Thale cress | cytosol | 78.93 | 76.77 |
| KRH26351 | Soybean | nucleus | 78.19 | 76.49 |
| VIT_12s0035g00170.t01 | Wine grape | plastid | 20.77 | 76.09 |
| PGSC0003DMT400001821 | Potato | cytosol | 77.15 | 74.82 |
| KRH44086 | Soybean | cytosol | 75.52 | 73.98 |
| VIT_12s0035g00160.t01 | Wine grape | cytosol | 16.32 | 73.83 |
| Solyc07g049480.2.1 | Tomato | nucleus | 77.0 | 71.0 |
| CDY50214 | Canola | cytosol | 22.85 | 64.71 |
| HORVU5Hr1G060590.1 | Barley | cytosol | 12.46 | 42.42 |
| HORVU5Hr1G060570.5 | Barley | cytosol | 25.82 | 31.13 |
| HORVU5Hr1G109220.1 | Barley | plastid | 17.95 | 15.36 |
Protein Annotations
| MapMan:16.2.1.2.3 | MapMan:16.2.2.1.5 | Gene3D:3.40.50.10890 | Gene3D:3.60.15.10 | UniProt:A0A287T0N5 | InterPro:Beta_Casp |
| InterPro:CPSF73-100_C | EnsemblPlantsGene:HORVU5Hr1G123370 | EnsemblPlants:HORVU5Hr1G123370.3 | InterPro:IPR036866 | InterPro:Metallo-B-lactamas | PFAM:PF00753 |
| PFAM:PF07521 | PFAM:PF10996 | PFAM:PF11718 | PANTHER:PTHR11203 | PANTHER:PTHR11203:SF11 | InterPro:RMMBL |
| InterPro:RibonucZ/Hydroxyglut_hydro | SMART:SM00849 | SMART:SM01027 | SMART:SM01098 | SUPFAM:SSF56281 | UniParc:UPI000B474A1F |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr5H:+:663885175..663889732
Molecular Weight (calculated)
75167.3 Da
IEP (calculated)
6.239
GRAVY (calculated)
-0.114
Length
674 amino acids
Sequence
(BLAST)
(BLAST)
001: REGDQMVVTP LGAGSEVGRS CVHMTFKGRT VLFDCGIHPA YSGMAALPYF DEIDPSAIDV LLVTHFHLDH AASLPYFLEK TTFKGRVFMT HATKAIYRLL
101: LSDYVKVSKV SVEDMLFDEQ DIIRSMDKIE VIDFHQTLEV NGIRFWCYTA GHVLGAAMFM VDIAGVRILY TGDYSREEDR HLKAAEIPQF SPDICIIEST
201: YGVQQHQPRH VREKRFTDAI HNTVSQGGRV LIPAFALGRA QELLLILDEY WSNHPELHKI PIYYASPLAK KCMAVYQTYI NSMNERIRNQ FAQSNPFHFK
301: HIDPLNSIDN FHDVGPSVVM ASPGSLQSGL SRQLFDKWCT DKKNTCVIPG YAVEGSLAKT IINEPREVTL ANGLTAPLNM QIFYISFSAH ADFPQTSGFL
401: GELCPPNIIL VHGEANEMGR LKQKLITQFD GTNTKIVSPK NCQSVEMYFS SEKMAKTIGR LAEKVPEVGD SVSGLLVKKG FTYQIMAPED LRVYTQLSTA
501: NITQRIAVPY SGSFEVIKYR LKQIYESVES STEEDVPTLT VHERVAIRLD SESYVTLQWS SDPISDMVSD SVVAMILNIG REGPKVVPIE EAVKTEEETE
601: RVGRKVVYAL MVSLFGDVKV AEEGKLIITV DGDAAHLDGR SGDVECASAG LKERIKTAFR RIQGAVRPIP LSAS
101: LSDYVKVSKV SVEDMLFDEQ DIIRSMDKIE VIDFHQTLEV NGIRFWCYTA GHVLGAAMFM VDIAGVRILY TGDYSREEDR HLKAAEIPQF SPDICIIEST
201: YGVQQHQPRH VREKRFTDAI HNTVSQGGRV LIPAFALGRA QELLLILDEY WSNHPELHKI PIYYASPLAK KCMAVYQTYI NSMNERIRNQ FAQSNPFHFK
301: HIDPLNSIDN FHDVGPSVVM ASPGSLQSGL SRQLFDKWCT DKKNTCVIPG YAVEGSLAKT IINEPREVTL ANGLTAPLNM QIFYISFSAH ADFPQTSGFL
401: GELCPPNIIL VHGEANEMGR LKQKLITQFD GTNTKIVSPK NCQSVEMYFS SEKMAKTIGR LAEKVPEVGD SVSGLLVKKG FTYQIMAPED LRVYTQLSTA
501: NITQRIAVPY SGSFEVIKYR LKQIYESVES STEEDVPTLT VHERVAIRLD SESYVTLQWS SDPISDMVSD SVVAMILNIG REGPKVVPIE EAVKTEEETE
601: RVGRKVVYAL MVSLFGDVKV AEEGKLIITV DGDAAHLDGR SGDVECASAG LKERIKTAFR RIQGAVRPIP LSAS
001: MASSSTSLKR REQPISRDGD QLIVTPLGAG SEVGRSCVYM SFRGKNILFD CGIHPAYSGM AALPYFDEID PSSIDVLLIT HFHIDHAASL PYFLEKTTFN
101: GRVFMTHATK AIYKLLLTDY VKVSKVSVED MLFDEQDINK SMDKIEVIDF HQTVEVNGIK FWCYTAGHVL GAAMFMVDIA GVRILYTGDY SREEDRHLRA
201: AELPQFSPDI CIIESTSGVQ LHQSRHIREK RFTDVIHSTV AQGGRVLIPA FALGRAQELL LILDEYWANH PDLHNIPIYY ASPLAKKCMA VYQTYILSMN
301: DRIRNQFANS NPFVFKHISP LNSIDDFNDV GPSVVMATPG GLQSGLSRQL FDSWCSDKKN ACIIPGYMVE GTLAKTIINE PKEVTLMNGL TAPLNMQVHY
401: ISFSAHADYA QTSTFLKELM PPNIILVHGE ANEMMRLKQK LLTEFPDGNT KIMTPKNCES VEMYFNSEKL AKTIGRLAEK TPDVGDTVSG ILVKKGFTYQ
501: IMAPDELHVF SQLSTATVTQ RITIPFVGAF GVIKHRLEKI FESVEFSTDE ESGLPALKVH ERVTVKQESE KHISLQWSSD PISDMVSDSI VALILNISRE
601: VPKIVMEEED AVKSEEENGK KVEKVIYALL VSLFGDVKLG ENGKLVIRVD GNVAQLDKES GEVESEHSGL KERVRVAFER IQSAVKPIPL SAS
101: GRVFMTHATK AIYKLLLTDY VKVSKVSVED MLFDEQDINK SMDKIEVIDF HQTVEVNGIK FWCYTAGHVL GAAMFMVDIA GVRILYTGDY SREEDRHLRA
201: AELPQFSPDI CIIESTSGVQ LHQSRHIREK RFTDVIHSTV AQGGRVLIPA FALGRAQELL LILDEYWANH PDLHNIPIYY ASPLAKKCMA VYQTYILSMN
301: DRIRNQFANS NPFVFKHISP LNSIDDFNDV GPSVVMATPG GLQSGLSRQL FDSWCSDKKN ACIIPGYMVE GTLAKTIINE PKEVTLMNGL TAPLNMQVHY
401: ISFSAHADYA QTSTFLKELM PPNIILVHGE ANEMMRLKQK LLTEFPDGNT KIMTPKNCES VEMYFNSEKL AKTIGRLAEK TPDVGDTVSG ILVKKGFTYQ
501: IMAPDELHVF SQLSTATVTQ RITIPFVGAF GVIKHRLEKI FESVEFSTDE ESGLPALKVH ERVTVKQESE KHISLQWSSD PISDMVSDSI VALILNISRE
601: VPKIVMEEED AVKSEEENGK KVEKVIYALL VSLFGDVKLG ENGKLVIRVD GNVAQLDKES GEVESEHSGL KERVRVAFER IQSAVKPIPL SAS
Arabidopsis Description
CPSF73-ICleavage and polyadenylation specificity factor subunit 3-I [Source:UniProtKB/Swiss-Prot;Acc:Q9C952]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.