Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH26351 | Soybean | nucleus | 91.42 | 91.29 |
| AT1G61010.4 | Thale cress | cytosol | 79.8 | 79.22 |
| CDY03781 | Canola | cytosol | 79.36 | 79.02 |
| Bra031460.1-P | Field mustard | cytosol | 79.65 | 78.96 |
| CDY68459 | Canola | cytosol | 79.65 | 78.96 |
| GSMUA_Achr6P00420_001 | Banana | cytosol, mitochondrion | 72.53 | 77.36 |
| PGSC0003DMT400001821 | Potato | cytosol | 77.33 | 76.55 |
| HORVU5Hr1G123370.3 | Barley | cytosol | 73.98 | 75.52 |
| TraesCS5D01G555600.1 | Wheat | cytosol | 74.85 | 74.42 |
| TraesCS4A01G324800.1 | Wheat | cytosol | 74.56 | 74.13 |
| TraesCS5B01G537400.1 | Wheat | cytosol | 74.42 | 73.99 |
| VIT_12s0035g00170.t01 | Wine grape | plastid | 19.77 | 73.91 |
| TraesCS5B01G360900.1 | Wheat | cytosol | 73.84 | 73.3 |
| Os03t0852900-01 | Rice | plastid | 74.56 | 73.29 |
| TraesCS5D01G367600.1 | Wheat | cytosol | 73.55 | 73.02 |
| Solyc07g049480.2.1 | Tomato | nucleus | 77.03 | 72.5 |
| Zm00001d034876_P001 | Maize | plastid | 73.4 | 72.45 |
| EER90498 | Sorghum | plastid | 72.97 | 72.23 |
| Zm00001d012831_P001 | Maize | plastid | 71.8 | 71.18 |
| CDY50214 | Canola | cytosol | 24.56 | 71.01 |
| TraesCS5B01G536400.1 | Wheat | cytosol | 69.62 | 70.23 |
| VIT_12s0035g00160.t01 | Wine grape | cytosol | 14.83 | 68.46 |
| TraesCS5A01G358600.1 | Wheat | cytosol, plasma membrane, plastid | 66.42 | 68.31 |
| HORVU5Hr1G088510.1 | Barley | mitochondrion, plastid | 69.48 | 67.71 |
| TraesCS4A01G336600.1 | Wheat | cytosol | 59.01 | 67.44 |
| KRH70353 | Soybean | cytosol | 24.85 | 32.14 |
| KRH30262 | Soybean | cytosol | 16.13 | 19.93 |
| KRH38460 | Soybean | cytosol | 18.31 | 17.05 |
| KRH08941 | Soybean | cytosol, nucleus | 18.17 | 16.94 |
| KRH30256 | Soybean | cytosol | 16.28 | 16.57 |
Protein Annotations
| EntrezGene:100813876 | MapMan:16.2.1.2.3 | MapMan:16.2.2.1.5 | Gene3D:3.40.50.10890 | Gene3D:3.60.15.10 | EMBL:ACUP02004908 |
| InterPro:Beta_Casp | InterPro:CPSF73-100_C | ncoils:Coil | EnsemblPlantsGene:GLYMA_08G188800 | UniProt:I1KUP5 | InterPro:IPR036866 |
| EnsemblPlants:KRH44086 | ProteinID:KRH44086 | ProteinID:KRH44086.1 | InterPro:Metallo-B-lactamas | PFAM:PF00753 | PFAM:PF07521 |
| PFAM:PF10996 | PFAM:PF11718 | PANTHER:PTHR11203 | PANTHER:PTHR11203:SF11 | InterPro:RMMBL | InterPro:RibonucZ/Hydroxyglut_hydro |
| SMART:SM00849 | SMART:SM01027 | SMART:SM01098 | SUPFAM:SSF56281 | UniParc:UPI0002338868 | SEG:seg |
Description
hypothetical protein
Coordinates
chr8:+:15132383..15137850
Molecular Weight (calculated)
76985.6 Da
IEP (calculated)
6.348
GRAVY (calculated)
-0.170
Length
688 amino acids
Sequence
(BLAST)
(BLAST)
001: MMDCGVKRRE SVREEDDEVM IVTPLGAGNE VGRSCVYMSY KGKSILFDCG IHLGFSGMSA LPYFDEIDPS TLDVLLITHF HLDHAASLPY FLEKTTFRGR
101: VFMTYATKAI YKLLLSDFVK VSKVSVEDML FDEQDINRSM DKIEVIDFHQ TVEVNGIRFW CYAAGHVLGA AMFMVDIAGV RVLYTGDYSR EEDRHLRAAE
201: IPQFSPDVCI IESTYGVQHH QPRHTREKRF TDVIHSTISQ GGRVLIPAYA LGRAQELLLI LDEYWANHPE LHNIPIYYAS PLAKKCLTVY ETYTLSMNDR
301: VQNAKSNPFS FKHISALSSI EVFKDVGPSV VMASPGGLQS GLSRQLFDKW CSDKKNTCVL PGFVVEGTLA KTIMTEPKEV TLMNGLSAPL NMQVHYISFS
401: AHADSAQTSA FLEELNPPNI ILVHGEANQM GRLKQKLTSQ FADRNTKILT PKNCQSVEMH FNSQKMAKTI GRLAEKTPEV GETVSGLLVK KGFTYQIMAP
501: DDLHVFSQLS TTNITQRITV PYSGAFSFIQ HRLKRIYESV EQSVDEESGV PELQVHECVT VKHEAEKHIS LHWTSDPISD MVSDSIVALI LNINRDVPKI
601: MAESDVIKIE EENKKKAEKV MHALLVSLFG DVKAGENGKL IINIDGNVAV LNKESGEVES ENEGLKERVR AAFQRIQSSV KPIPLSAP
101: VFMTYATKAI YKLLLSDFVK VSKVSVEDML FDEQDINRSM DKIEVIDFHQ TVEVNGIRFW CYAAGHVLGA AMFMVDIAGV RVLYTGDYSR EEDRHLRAAE
201: IPQFSPDVCI IESTYGVQHH QPRHTREKRF TDVIHSTISQ GGRVLIPAYA LGRAQELLLI LDEYWANHPE LHNIPIYYAS PLAKKCLTVY ETYTLSMNDR
301: VQNAKSNPFS FKHISALSSI EVFKDVGPSV VMASPGGLQS GLSRQLFDKW CSDKKNTCVL PGFVVEGTLA KTIMTEPKEV TLMNGLSAPL NMQVHYISFS
401: AHADSAQTSA FLEELNPPNI ILVHGEANQM GRLKQKLTSQ FADRNTKILT PKNCQSVEMH FNSQKMAKTI GRLAEKTPEV GETVSGLLVK KGFTYQIMAP
501: DDLHVFSQLS TTNITQRITV PYSGAFSFIQ HRLKRIYESV EQSVDEESGV PELQVHECVT VKHEAEKHIS LHWTSDPISD MVSDSIVALI LNINRDVPKI
601: MAESDVIKIE EENKKKAEKV MHALLVSLFG DVKAGENGKL IINIDGNVAV LNKESGEVES ENEGLKERVR AAFQRIQSSV KPIPLSAP
001: MASSSTSLKR REQPISRDGD QLIVTPLGAG SEVGRSCVYM SFRGKNILFD CGIHPAYSGM AALPYFDEID PSSIDVLLIT HFHIDHAASL PYFLEKTTFN
101: GRVFMTHATK AIYKLLLTDY VKVSKVSVED MLFDEQDINK SMDKIEVIDF HQTVEVNGIK FWCYTAGHVL GAAMFMVDIA GVRILYTGDY SREEDRHLRA
201: AELPQFSPDI CIIESTSGVQ LHQSRHIREK RFTDVIHSTV AQGGRVLIPA FALGRAQELL LILDEYWANH PDLHNIPIYY ASPLAKKCMA VYQTYILSMN
301: DRIRNQFANS NPFVFKHISP LNSIDDFNDV GPSVVMATPG GLQSGLSRQL FDSWCSDKKN ACIIPGYMVE GTLAKTIINE PKEVTLMNGL TAPLNMQVHY
401: ISFSAHADYA QTSTFLKELM PPNIILVHGE ANEMMRLKQK LLTEFPDGNT KIMTPKNCES VEMYFNSEKL AKTIGRLAEK TPDVGDTVSG ILVKKGFTYQ
501: IMAPDELHVF SQLSTATVTQ RITIPFVGAF GVIKHRLEKI FESVEFSTDE ESGLPALKVH ERVTVKQESE KHISLQWSSD PISDMVSDSI VALILNISRE
601: VPKIVMEEED AVKSEEENGK KVEKVIYALL VSLFGDVKLG ENGKLVIRVD GNVAQLDKES GEVESEHSGL KERVRVAFER IQSAVKPIPL SAS
101: GRVFMTHATK AIYKLLLTDY VKVSKVSVED MLFDEQDINK SMDKIEVIDF HQTVEVNGIK FWCYTAGHVL GAAMFMVDIA GVRILYTGDY SREEDRHLRA
201: AELPQFSPDI CIIESTSGVQ LHQSRHIREK RFTDVIHSTV AQGGRVLIPA FALGRAQELL LILDEYWANH PDLHNIPIYY ASPLAKKCMA VYQTYILSMN
301: DRIRNQFANS NPFVFKHISP LNSIDDFNDV GPSVVMATPG GLQSGLSRQL FDSWCSDKKN ACIIPGYMVE GTLAKTIINE PKEVTLMNGL TAPLNMQVHY
401: ISFSAHADYA QTSTFLKELM PPNIILVHGE ANEMMRLKQK LLTEFPDGNT KIMTPKNCES VEMYFNSEKL AKTIGRLAEK TPDVGDTVSG ILVKKGFTYQ
501: IMAPDELHVF SQLSTATVTQ RITIPFVGAF GVIKHRLEKI FESVEFSTDE ESGLPALKVH ERVTVKQESE KHISLQWSSD PISDMVSDSI VALILNISRE
601: VPKIVMEEED AVKSEEENGK KVEKVIYALL VSLFGDVKLG ENGKLVIRVD GNVAQLDKES GEVESEHSGL KERVRVAFER IQSAVKPIPL SAS
Arabidopsis Description
CPSF73-ICleavage and polyadenylation specificity factor subunit 3-I [Source:UniProtKB/Swiss-Prot;Acc:Q9C952]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.