CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44086	Soybean	cytosol	91.29	91.42
CDY03781	Canola	cytosol	80.99	80.75
Bra031460.1-P	Field mustard	cytosol	81.28	80.69
CDY68459	Canola	cytosol	81.28	80.69
AT1G61010.4	Thale cress	cytosol	81.13	80.66
GSMUA_Achr6P00420_001	Banana	cytosol, mitochondrion	74.89	80.0
HORVU5Hr1G123370.3	Barley	cytosol	76.49	78.19
VIT_12s0035g00170.t01	Wine grape	plastid	20.75	77.72
PGSC0003DMT400001821	Potato	cytosol	78.23	77.55
Os03t0852900-01	Rice	plastid	78.23	77.0
TraesCS5D01G555600.1	Wheat	cytosol	77.21	76.88
TraesCS4A01G324800.1	Wheat	cytosol	77.07	76.73
TraesCS5B01G537400.1	Wheat	cytosol	76.78	76.45
Zm00001d034876_P001	Maize	plastid	76.63	75.75
EER90498	Sorghum	plastid	75.62	74.96
TraesCS5B01G360900.1	Wheat	cytosol	75.33	74.89
TraesCS5D01G367600.1	Wheat	cytosol	75.18	74.75
Zm00001d012831_P001	Maize	plastid	74.46	73.92
Solyc07g049480.2.1	Tomato	nucleus	77.79	73.32
VIT_12s0035g00160.t01	Wine grape	cytosol	15.82	73.15
TraesCS5B01G536400.1	Wheat	cytosol	71.41	72.14
CDY50214	Canola	cytosol	24.38	70.59
TraesCS4A01G336600.1	Wheat	cytosol	61.25	70.1
TraesCS5A01G358600.1	Wheat	cytosol, plasma membrane, plastid	67.34	69.36
HORVU5Hr1G088510.1	Barley	mitochondrion, plastid	69.81	68.13
KRH70353	Soybean	cytosol	24.67	31.95
KRH30262	Soybean	cytosol	16.11	19.93
KRH38460	Soybean	cytosol	18.14	16.91
KRH08941	Soybean	cytosol, nucleus	18.0	16.8
KRH30256	Soybean	cytosol	16.11	16.42

Protein Annotations

EntrezGene:100806136	MapMan:16.2.1.2.3	MapMan:16.2.2.1.5	Gene3D:3.40.50.10890	Gene3D:3.60.15.10	EMBL:ACUP02007708
InterPro:Beta_Casp	InterPro:CPSF73-100_C	ncoils:Coil	EnsemblPlantsGene:GLYMA_12G168900	InterPro:IPR036866	UniProt:K7LVE4
EnsemblPlants:KRH26351	ProteinID:KRH26351	ProteinID:KRH26351.1	InterPro:Metallo-B-lactamas	PFAM:PF00753	PFAM:PF07521
PFAM:PF10996	PFAM:PF11718	PANTHER:PTHR11203	PANTHER:PTHR11203:SF11	InterPro:RMMBL	InterPro:RibonucZ/Hydroxyglut_hydro
SMART:SM00849	SMART:SM01027	SMART:SM01098	SUPFAM:SSF56281	UniParc:UPI000233D1A0	SEG:seg

Description

hypothetical protein

Coordinates

chr12:-:32402557..32410220

Molecular Weight (calculated)

76957.2 Da

IEP (calculated)

6.290

GRAVY (calculated)

-0.199

Length

689 amino acids

Sequence
(BLAST)

001: MNNCTAKRRE NARSSREEDQ LIVTPLGAGN EVGRSCVYMS YKGKTVLFDC GIHPAYSGMA ALPYFDEIDP STVDVLLITH FHLDHAASLP YFLEKTTFRG
101: RVFMTYATKA IYKLLLSDFV KVSKVSVEDM LFDEQDINRS MDKIEVIDFH QTVEVNGIRF WCYTAGHVLG AAMFMVDIAG VRVLYTGDYS REEDRHLRAA
201: ETPQFSPDVC IIESTYGVQH HQPRHTREKR FTDVIHSTIS QGGRVLIPAF ALGRAQELLL ILDEYWANHP ELQNIPIYYA SPLAKKCLTV YETYTLSMND
301: RIQNAKSNPF SFKHVSALSS IEVFKDVGPS VVMASPGGLQ SGLSRQLFDM WCSDKKNSCV LPGYVVEGTL AKTIINEPKE VTLMNGLTAP LNMQVHYISF
401: SAHADSAQTS AFLEELNPPN IILVHGEANE MGRLKQKLIS QFADRNTKIL TPKNCQSVEM YFNSQKMAKT IGKLAEKTPE VGETVSGLLV KKGFTYQIMA
501: ADDLHVFSQL STANITQRIT IPYSGAFNVI QHRLKQIYES VAQSVDEESG VPTLQVHECV TVKHESEKHV SLHWASDPMS DMVSDSIVAL VLNINRDVPK
601: IVNESDAIKI EEENEKKAEK VMQALLVSLF GDVKVGENGK LIINIDGNVA ELNKESGEVE SENEGLKERV RTAFRRIQSS VKPIPVSAP

Best Arabidopsis Sequence Match ( AT1G61010.4 )
(BLAST)

001: MASSSTSLKR REQPISRDGD QLIVTPLGAG SEVGRSCVYM SFRGKNILFD CGIHPAYSGM AALPYFDEID PSSIDVLLIT HFHIDHAASL PYFLEKTTFN
101: GRVFMTHATK AIYKLLLTDY VKVSKVSVED MLFDEQDINK SMDKIEVIDF HQTVEVNGIK FWCYTAGHVL GAAMFMVDIA GVRILYTGDY SREEDRHLRA
201: AELPQFSPDI CIIESTSGVQ LHQSRHIREK RFTDVIHSTV AQGGRVLIPA FALGRAQELL LILDEYWANH PDLHNIPIYY ASPLAKKCMA VYQTYILSMN
301: DRIRNQFANS NPFVFKHISP LNSIDDFNDV GPSVVMATPG GLQSGLSRQL FDSWCSDKKN ACIIPGYMVE GTLAKTIINE PKEVTLMNGL TAPLNMQVHY
401: ISFSAHADYA QTSTFLKELM PPNIILVHGE ANEMMRLKQK LLTEFPDGNT KIMTPKNCES VEMYFNSEKL AKTIGRLAEK TPDVGDTVSG ILVKKGFTYQ
501: IMAPDELHVF SQLSTATVTQ RITIPFVGAF GVIKHRLEKI FESVEFSTDE ESGLPALKVH ERVTVKQESE KHISLQWSSD PISDMVSDSI VALILNISRE
601: VPKIVMEEED AVKSEEENGK KVEKVIYALL VSLFGDVKLG ENGKLVIRVD GNVAQLDKES GEVESEHSGL KERVRVAFER IQSAVKPIPL SAS

Arabidopsis Description

CPSF73-ICleavage and polyadenylation specificity factor subunit 3-I [Source:UniProtKB/Swiss-Prot;Acc:Q9C952]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.