Factsheet for PGSC0003DMT400001821

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g049480.2.1	Tomato	nucleus	97.84	93.02
VIT_12s0035g00190.t01	Wine grape	cytosol	82.59	82.71
VIT_12s0035g00030.t01	Wine grape	cytosol, plasma membrane, plastid	81.87	82.11
CDY03781	Canola	cytosol	78.27	78.73
Bra031460.1-P	Field mustard	cytosol	78.42	78.53
CDY68459	Canola	cytosol	78.42	78.53
GSMUA_Achr6P00420_001	Banana	cytosol, mitochondrion	72.66	78.29
KRH26351	Soybean	nucleus	77.55	78.23
AT1G61010.4	Thale cress	cytosol	77.41	77.63
KRH44086	Soybean	cytosol	76.55	77.33
HORVU5Hr1G123370.3	Barley	cytosol	74.82	77.15
TraesCS5D01G555600.1	Wheat	cytosol	74.96	75.29
TraesCS4A01G324800.1	Wheat	cytosol	74.96	75.29
Zm00001d034876_P001	Maize	plastid	75.4	75.18
TraesCS5B01G537400.1	Wheat	cytosol	74.82	75.14
Os03t0852900-01	Rice	plastid	75.68	75.14
EER90498	Sorghum	plastid	74.96	74.96
TraesCS5D01G367600.1	Wheat	cytosol	74.1	74.31
TraesCS5B01G360900.1	Wheat	cytosol	73.81	74.03
Zm00001d012831_P001	Maize	plastid	73.67	73.78
TraesCS5B01G536400.1	Wheat	cytosol	69.06	70.38
TraesCS5A01G358600.1	Wheat	cytosol, plasma membrane, plastid	66.76	69.36
TraesCS4A01G336600.1	Wheat	cytosol	58.85	67.94
HORVU5Hr1G088510.1	Barley	mitochondrion, plastid	68.78	67.71
CDY50214	Canola	cytosol	23.17	67.65
PGSC0003DMT400075788	Potato	extracellular	8.92	17.61

Protein Annotations

EntrezGene:102582676	MapMan:16.2.1.2.3	MapMan:16.2.2.1.5	Gene3D:3.40.50.10890	Gene3D:3.60.15.10	InterPro:Beta_Casp
InterPro:CPSF73-100_C	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016180	InterPro:IPR036866	UniProt:M0ZJ54
InterPro:Metallo-B-lactamas	PFAM:PF00753	PFAM:PF07521	PFAM:PF10996	PFAM:PF11718	EnsemblPlantsGene:PGSC0003DMG400000682
PGSC:PGSC0003DMG400000682	EnsemblPlants:PGSC0003DMT400001821	PANTHER:PTHR11203	PANTHER:PTHR11203:SF11	InterPro:RMMBL	InterPro:RibonucZ/Hydroxyglut_hydro
SMART:SM00849	SMART:SM01027	SMART:SM01098	SUPFAM:SSF56281	UniParc:UPI000294AB90	RefSeq:XP_006357977.1

Description

Cleavage and polyadenylation specificity factor subunit 3-I [Source:PGSC_GENE;Acc:PGSC0003DMG400000682]

Coordinates

chr7:+:45276252..45284983

Molecular Weight (calculated)

77743.5 Da

IEP (calculated)

6.442

GRAVY (calculated)

-0.152

Length

695 amino acids

Sequence
(BLAST)

001: MASTGQPQSS LKRPNPGVNR DGDKLVITPL GAGNEVGRSC VFMTFKGKTI MFDCGIHPGY SGMSALPYFD EIDPSSIDVL LVTHFHLDHA ASLPYFLEKT
101: TFKGRVFMTH ATKAIYKLLL SDYVKVSKVS VEDMLFDEHD ILRSMEKIEV IDFHQTMEVN GIRFWCYTAG HVLGAAMFMV DIAGVRVLYT GDYSREEDRH
201: LRAAETPQFS PDVCIIESTY GVQLHMPRQI REKLFTDVIH STLMQGGRVL IPAYALGRAQ ELLLILEEYW SNHPELANFP IYYASPLARR CMAVYQTYIN
301: AMNERIRNQF VSSNPFNFKH ISSLNSIEDF IDNKPCVVMA SPGSLQSGLS RQLFDKWCSD KKNACVIPGY VVEGTLAKTI INEPKEVTLT NGLSAPLNMQ
401: VHYISFSAHA DYAQTSTFLK ELMPPNIILV HGASNEMDRL KQKLTSLFAD GNTKIITPKN CQSVEMHFNS EKMAKTIGKL AEKTPEAGEI VSGLLVKKGF
501: TYQIMAPDDL HVFSQLSTAN VTQRITIPYS GAFAVIQHRL KQIYESVESS TDEESGVPTL RVHERVTVKQ ESENHLSVHW TADPICDMVS DSVVALVLNA
601: SREMPKVSID SETSINEEED AKKTEKIVHA LLVSMFGNVK FGDDGKLIIN FDGILAHLDK QTGDVECENE ALKERVKTAY WRIRSAVKPI PLSVS

Best Arabidopsis Sequence Match ( AT1G61010.4 )
(BLAST)

001: MASSSTSLKR REQPISRDGD QLIVTPLGAG SEVGRSCVYM SFRGKNILFD CGIHPAYSGM AALPYFDEID PSSIDVLLIT HFHIDHAASL PYFLEKTTFN
101: GRVFMTHATK AIYKLLLTDY VKVSKVSVED MLFDEQDINK SMDKIEVIDF HQTVEVNGIK FWCYTAGHVL GAAMFMVDIA GVRILYTGDY SREEDRHLRA
201: AELPQFSPDI CIIESTSGVQ LHQSRHIREK RFTDVIHSTV AQGGRVLIPA FALGRAQELL LILDEYWANH PDLHNIPIYY ASPLAKKCMA VYQTYILSMN
301: DRIRNQFANS NPFVFKHISP LNSIDDFNDV GPSVVMATPG GLQSGLSRQL FDSWCSDKKN ACIIPGYMVE GTLAKTIINE PKEVTLMNGL TAPLNMQVHY
401: ISFSAHADYA QTSTFLKELM PPNIILVHGE ANEMMRLKQK LLTEFPDGNT KIMTPKNCES VEMYFNSEKL AKTIGRLAEK TPDVGDTVSG ILVKKGFTYQ
501: IMAPDELHVF SQLSTATVTQ RITIPFVGAF GVIKHRLEKI FESVEFSTDE ESGLPALKVH ERVTVKQESE KHISLQWSSD PISDMVSDSI VALILNISRE
601: VPKIVMEEED AVKSEEENGK KVEKVIYALL VSLFGDVKLG ENGKLVIRVD GNVAQLDKES GEVESEHSGL KERVRVAFER IQSAVKPIPL SAS

Arabidopsis Description

CPSF73-ICleavage and polyadenylation specificity factor subunit 3-I [Source:UniProtKB/Swiss-Prot;Acc:Q9C952]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.