Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031460.1-P | Field mustard | cytosol | 94.81 | 94.67 |
| CDY68459 | Canola | cytosol | 94.81 | 94.67 |
| CDY03781 | Canola | cytosol | 93.94 | 94.21 |
| CDY50214 | Canola | cytosol | 28.86 | 84.03 |
| KRH26351 | Soybean | nucleus | 80.66 | 81.13 |
| KRH44086 | Soybean | cytosol | 79.22 | 79.8 |
| GSMUA_Achr6P00420_001 | Banana | cytosol, mitochondrion | 73.88 | 79.38 |
| HORVU5Hr1G123370.3 | Barley | cytosol | 76.77 | 78.93 |
| TraesCS5D01G555600.1 | Wheat | cytosol | 77.34 | 77.46 |
| PGSC0003DMT400001821 | Potato | cytosol | 77.63 | 77.41 |
| TraesCS5B01G537400.1 | Wheat | cytosol | 77.2 | 77.31 |
| TraesCS4A01G324800.1 | Wheat | cytosol | 77.2 | 77.31 |
| VIT_12s0035g00170.t01 | Wine grape | plastid | 20.35 | 76.63 |
| Os03t0852900-01 | Rice | plastid | 77.2 | 76.43 |
| Zm00001d034876_P001 | Maize | plastid | 76.62 | 76.18 |
| EER90498 | Sorghum | plastid | 76.19 | 75.97 |
| VIT_12s0035g00160.t01 | Wine grape | cytosol | 16.31 | 75.84 |
| TraesCS5D01G367600.1 | Wheat | cytosol | 75.47 | 75.47 |
| TraesCS5B01G360900.1 | Wheat | cytosol | 75.04 | 75.04 |
| Zm00001d012831_P001 | Maize | plastid | 75.04 | 74.93 |
| Solyc07g049480.2.1 | Tomato | nucleus | 77.49 | 73.46 |
| TraesCS5B01G536400.1 | Wheat | cytosol | 71.28 | 72.43 |
| TraesCS4A01G336600.1 | Wheat | cytosol | 61.33 | 70.6 |
| TraesCS5A01G358600.1 | Wheat | cytosol, plasma membrane, plastid | 67.24 | 69.66 |
| HORVU5Hr1G088510.1 | Barley | mitochondrion, plastid | 70.27 | 68.98 |
| AT2G01730.1 | Thale cress | cytoskeleton, cytosol, plasma membrane | 27.13 | 30.67 |
| AT5G23880.1 | Thale cress | cytosol | 18.61 | 17.46 |
Protein Annotations
| MapMan:16.2.1.2.3 | MapMan:16.2.2.1.5 | Gene3D:3.40.50.10890 | Gene3D:3.60.15.10 | EntrezGene:842393 | UniProt:A0A178WGJ2 |
| ProteinID:AAG51638.1 | ProteinID:AEE33766.1 | ProteinID:AEE33767.1 | ProteinID:AEE33768.1 | EMBL:AK316692 | EMBL:AK316794 |
| ProteinID:ANM58845.1 | ProteinID:ANM58846.1 | ArrayExpress:AT1G61010 | EnsemblPlantsGene:AT1G61010 | RefSeq:AT1G61010 | TAIR:AT1G61010 |
| RefSeq:AT1G61010-TAIR-G | EnsemblPlants:AT1G61010.4 | EMBL:AY074280 | EMBL:AY140900 | EMBL:AY150478 | Unigene:At.23510 |
| InterPro:Beta_Casp | InterPro:CPSF73-100_C | Symbol:CPSF73-I | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004518 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016180 |
| GO:GO:0016787 | GO:GO:0090305 | InterPro:IPR036866 | InterPro:Metallo-B-lactamas | RefSeq:NP_001031215.1 | RefSeq:NP_001319278.1 |
| RefSeq:NP_001321253.1 | RefSeq:NP_176297.1 | RefSeq:NP_849835.1 | ProteinID:OAP17366.1 | PFAM:PF00753 | PFAM:PF07521 |
| PFAM:PF10996 | PFAM:PF11718 | PANTHER:PTHR11203 | PANTHER:PTHR11203:SF11 | UniProt:Q9C952 | InterPro:RMMBL |
| InterPro:RibonucZ/Hydroxyglut_hydro | SMART:SM00849 | SMART:SM01027 | SMART:SM01098 | SUPFAM:SSF56281 | UniParc:UPI00000AC5C6 |
Description
CPSF73-ICleavage and polyadenylation specificity factor subunit 3-I [Source:UniProtKB/Swiss-Prot;Acc:Q9C952]
Coordinates
chr1:-:22474298..22477759
Molecular Weight (calculated)
77369.2 Da
IEP (calculated)
5.966
GRAVY (calculated)
-0.113
Length
693 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSTSLKR REQPISRDGD QLIVTPLGAG SEVGRSCVYM SFRGKNILFD CGIHPAYSGM AALPYFDEID PSSIDVLLIT HFHIDHAASL PYFLEKTTFN
101: GRVFMTHATK AIYKLLLTDY VKVSKVSVED MLFDEQDINK SMDKIEVIDF HQTVEVNGIK FWCYTAGHVL GAAMFMVDIA GVRILYTGDY SREEDRHLRA
201: AELPQFSPDI CIIESTSGVQ LHQSRHIREK RFTDVIHSTV AQGGRVLIPA FALGRAQELL LILDEYWANH PDLHNIPIYY ASPLAKKCMA VYQTYILSMN
301: DRIRNQFANS NPFVFKHISP LNSIDDFNDV GPSVVMATPG GLQSGLSRQL FDSWCSDKKN ACIIPGYMVE GTLAKTIINE PKEVTLMNGL TAPLNMQVHY
401: ISFSAHADYA QTSTFLKELM PPNIILVHGE ANEMMRLKQK LLTEFPDGNT KIMTPKNCES VEMYFNSEKL AKTIGRLAEK TPDVGDTVSG ILVKKGFTYQ
501: IMAPDELHVF SQLSTATVTQ RITIPFVGAF GVIKHRLEKI FESVEFSTDE ESGLPALKVH ERVTVKQESE KHISLQWSSD PISDMVSDSI VALILNISRE
601: VPKIVMEEED AVKSEEENGK KVEKVIYALL VSLFGDVKLG ENGKLVIRVD GNVAQLDKES GEVESEHSGL KERVRVAFER IQSAVKPIPL SAS
101: GRVFMTHATK AIYKLLLTDY VKVSKVSVED MLFDEQDINK SMDKIEVIDF HQTVEVNGIK FWCYTAGHVL GAAMFMVDIA GVRILYTGDY SREEDRHLRA
201: AELPQFSPDI CIIESTSGVQ LHQSRHIREK RFTDVIHSTV AQGGRVLIPA FALGRAQELL LILDEYWANH PDLHNIPIYY ASPLAKKCMA VYQTYILSMN
301: DRIRNQFANS NPFVFKHISP LNSIDDFNDV GPSVVMATPG GLQSGLSRQL FDSWCSDKKN ACIIPGYMVE GTLAKTIINE PKEVTLMNGL TAPLNMQVHY
401: ISFSAHADYA QTSTFLKELM PPNIILVHGE ANEMMRLKQK LLTEFPDGNT KIMTPKNCES VEMYFNSEKL AKTIGRLAEK TPDVGDTVSG ILVKKGFTYQ
501: IMAPDELHVF SQLSTATVTQ RITIPFVGAF GVIKHRLEKI FESVEFSTDE ESGLPALKVH ERVTVKQESE KHISLQWSSD PISDMVSDSI VALILNISRE
601: VPKIVMEEED AVKSEEENGK KVEKVIYALL VSLFGDVKLG ENGKLVIRVD GNVAQLDKES GEVESEHSGL KERVRVAFER IQSAVKPIPL SAS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.