Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_12s0035g00190.t01 | Wine grape | cytosol | 83.89 | 18.01 |
| VIT_12s0035g00030.t01 | Wine grape | cytosol, plasma membrane, plastid | 83.22 | 17.89 |
| HORVU5Hr1G123370.3 | Barley | cytosol | 73.83 | 16.32 |
| AT1G61010.4 | Thale cress | cytosol | 75.84 | 16.31 |
| CDY03781 | Canola | cytosol | 74.5 | 16.06 |
| Bra031460.1-P | Field mustard | cytosol | 74.5 | 15.99 |
| CDY68459 | Canola | cytosol | 74.5 | 15.99 |
| CDY50214 | Canola | cytosol | 25.5 | 15.97 |
| TraesCS4A01G336600.1 | Wheat | cytosol | 64.43 | 15.95 |
| TraesCS4A01G324800.1 | Wheat | cytosol | 73.83 | 15.9 |
| TraesCS5D01G555600.1 | Wheat | cytosol | 73.83 | 15.9 |
| TraesCS5B01G537400.1 | Wheat | cytosol | 73.83 | 15.9 |
| KRH26351 | Soybean | nucleus | 73.15 | 15.82 |
| Zm00001d034876_P001 | Maize | plastid | 73.83 | 15.78 |
| Os03t0852900-01 | Rice | plastid | 73.83 | 15.71 |
| EER90498 | Sorghum | plastid | 73.15 | 15.68 |
| Zm00001d012831_P001 | Maize | plastid | 72.48 | 15.56 |
| TraesCS5A01G358600.1 | Wheat | cytosol, plasma membrane, plastid | 69.13 | 15.4 |
| TraesCS5D01G367600.1 | Wheat | cytosol | 71.14 | 15.3 |
| TraesCS5B01G360900.1 | Wheat | cytosol | 70.47 | 15.15 |
| HORVU5Hr1G088510.1 | Barley | mitochondrion, plastid | 71.14 | 15.01 |
| TraesCS5B01G536400.1 | Wheat | cytosol | 68.46 | 14.96 |
| KRH44086 | Soybean | cytosol | 68.46 | 14.83 |
| GSMUA_Achr6P00420_001 | Banana | cytosol, mitochondrion | 51.01 | 11.78 |
| VIT_16s0050g00590.t01 | Wine grape | cytosol | 22.82 | 4.59 |
| VIT_01s0011g05780.t01 | Wine grape | cytosol | 0.0 | 0.0 |
| VIT_12s0035g00170.t01 | Wine grape | plastid | 0.0 | 0.0 |
Protein Annotations
| ArrayExpress:VIT_12s0035g00160 | EMBL:FN595990 | EnsemblPlants:VIT_12s0035g00160.t01 | EnsemblPlantsGene:VIT_12s0035g00160 | Gene3D:3.40.50.10890 | InterPro:Beta_Casp |
| InterPro:IPR036866 | InterPro:RMMBL | InterPro:RibonucZ/Hydroxyglut_hydro | PANTHER:PTHR11203 | PANTHER:PTHR11203:SF11 | PFAM:PF07521 |
| PFAM:PF10996 | ProteinID:CCB55088 | ProteinID:CCB55088.1 | SUPFAM:SSF56281 | UniParc:UPI0002108DF8 | UniProt:F6HK85 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr12:-:19392859..19393308
Molecular Weight (calculated)
16859.5 Da
IEP (calculated)
5.652
GRAVY (calculated)
-0.091
Length
149 amino acids
Sequence
(BLAST)
(BLAST)
001: MNERIRNQFE NLNPFDFKPI SHLKSIENLN DVGPSVVMAS PSGLSRQLFD MWCFDKKNAC VILGYVMEGI LAKTIINEPK EVTLINGLTV PLNMQVYYIS
101: FSTHADFAQT STFVKELMPP NIILVHGEAN EMGRLKQNLI DRVQDQGLT
101: FSTHADFAQT STFVKELMPP NIILVHGEAN EMGRLKQNLI DRVQDQGLT
001: MASSSTSLKR REQPISRDGD QLIVTPLGAG SEVGRSCVYM SFRGKNILFD CGIHPAYSGM AALPYFDEID PSSIDVLLIT HFHIDHAASL PYFLEKTTFN
101: GRVFMTHATK AIYKLLLTDY VKVSKVSVED MLFDEQDINK SMDKIEVIDF HQTVEVNGIK FWCYTAGHVL GAAMFMVDIA GVRILYTGDY SREEDRHLRA
201: AELPQFSPDI CIIESTSGVQ LHQSRHIREK RFTDVIHSTV AQGGRVLIPA FALGRAQELL LILDEYWANH PDLHNIPIYY ASPLAKKCMA VYQTYILSMN
301: DRIRNQFANS NPFVFKHISP LNSIDDFNDV GPSVVMATPG GLQSGLSRQL FDSWCSDKKN ACIIPGYMVE GTLAKTIINE PKEVTLMNGL TAPLNMQVHY
401: ISFSAHADYA QTSTFLKELM PPNIILVHGE ANEMMRLKQK LLTEFPDGNT KIMTPKNCES VEMYFNSEKL AKTIGRLAEK TPDVGDTVSG ILVKKGFTYQ
501: IMAPDELHVF SQLSTATVTQ RITIPFVGAF GVIKHRLEKI FESVEFSTDE ESGLPALKVH ERVTVKQESE KHISLQWSSD PISDMVSDSI VALILNISRE
601: VPKIVMEEED AVKSEEENGK KVEKVIYALL VSLFGDVKLG ENGKLVIRVD GNVAQLDKES GEVESEHSGL KERVRVAFER IQSAVKPIPL SAS
101: GRVFMTHATK AIYKLLLTDY VKVSKVSVED MLFDEQDINK SMDKIEVIDF HQTVEVNGIK FWCYTAGHVL GAAMFMVDIA GVRILYTGDY SREEDRHLRA
201: AELPQFSPDI CIIESTSGVQ LHQSRHIREK RFTDVIHSTV AQGGRVLIPA FALGRAQELL LILDEYWANH PDLHNIPIYY ASPLAKKCMA VYQTYILSMN
301: DRIRNQFANS NPFVFKHISP LNSIDDFNDV GPSVVMATPG GLQSGLSRQL FDSWCSDKKN ACIIPGYMVE GTLAKTIINE PKEVTLMNGL TAPLNMQVHY
401: ISFSAHADYA QTSTFLKELM PPNIILVHGE ANEMMRLKQK LLTEFPDGNT KIMTPKNCES VEMYFNSEKL AKTIGRLAEK TPDVGDTVSG ILVKKGFTYQ
501: IMAPDELHVF SQLSTATVTQ RITIPFVGAF GVIKHRLEKI FESVEFSTDE ESGLPALKVH ERVTVKQESE KHISLQWSSD PISDMVSDSI VALILNISRE
601: VPKIVMEEED AVKSEEENGK KVEKVIYALL VSLFGDVKLG ENGKLVIRVD GNVAQLDKES GEVESEHSGL KERVRVAFER IQSAVKPIPL SAS
Arabidopsis Description
CPSF73-ICleavage and polyadenylation specificity factor subunit 3-I [Source:UniProtKB/Swiss-Prot;Acc:Q9C952]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.