CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 7
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034876_P001	Maize	plastid	96.98	96.7
Zm00001d012831_P001	Maize	plastid	94.96	95.1
HORVU5Hr1G123370.3	Barley	cytosol	87.91	90.65
TraesCS5D01G555600.1	Wheat	cytosol	90.22	90.61
TraesCS5B01G537400.1	Wheat	cytosol	90.07	90.46
TraesCS4A01G324800.1	Wheat	cytosol	90.07	90.46
Os03t0852900-01	Rice	plastid	91.08	90.43
TraesCS5D01G367600.1	Wheat	cytosol	88.35	88.6
TraesCS5B01G360900.1	Wheat	cytosol	88.2	88.46
TraesCS5B01G536400.1	Wheat	cytosol	82.88	84.46
TraesCS4A01G336600.1	Wheat	cytosol	71.37	82.39
TraesCS5A01G358600.1	Wheat	cytosol, plasma membrane, plastid	77.55	80.57
GSMUA_Achr6P00420_001	Banana	cytosol, mitochondrion	74.68	80.47
VIT_12s0035g00190.t01	Wine grape	cytosol	80.14	80.26
HORVU5Hr1G088510.1	Barley	mitochondrion, plastid	80.86	79.6
VIT_12s0035g00030.t01	Wine grape	cytosol, plasma membrane, plastid	79.28	79.51
CDY03781	Canola	cytosol	76.55	76.99
Bra031460.1-P	Field mustard	cytosol	76.83	76.95
CDY68459	Canola	cytosol	76.83	76.95
AT1G61010.4	Thale cress	cytosol	75.97	76.19
VIT_12s0035g00170.t01	Wine grape	plastid	20.14	76.09
KRH26351	Soybean	nucleus	74.96	75.62
PGSC0003DMT400001821	Potato	cytosol	74.96	74.96
VIT_12s0035g00160.t01	Wine grape	cytosol	15.68	73.15
KRH44086	Soybean	cytosol	72.23	72.97
Solyc07g049480.2.1	Tomato	nucleus	74.82	71.14
CDY50214	Canola	cytosol	22.16	64.71
EES01080	Sorghum	cytosol	25.18	31.36
EER93127	Sorghum	cytosol	17.55	16.53

Protein Annotations

MapMan:16.2.1.2.3	MapMan:16.2.2.1.5	Gene3D:3.40.50.10890	Gene3D:3.60.15.10	EntrezGene:8061396	InterPro:Beta_Casp
UniProt:C5WS11	InterPro:CPSF73-100_C	EnsemblPlants:EER90498	ProteinID:EER90498	ProteinID:EER90498.1	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016180	InterPro:IPR036866	InterPro:Metallo-B-lactamas	PFAM:PF00753	PFAM:PF07521
PFAM:PF10996	PFAM:PF11718	PANTHER:PTHR11203	PANTHER:PTHR11203:SF11	InterPro:RMMBL	InterPro:RibonucZ/Hydroxyglut_hydro
SMART:SM00849	SMART:SM01027	SMART:SM01098	EnsemblPlantsGene:SORBI_3001G008500	SUPFAM:SSF56281	unigene:Sbi.12015
UniParc:UPI0001A824D1	RefSeq:XP_002463500.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:815311..818496

Molecular Weight (calculated)

77219.8 Da

IEP (calculated)

6.740

GRAVY (calculated)

-0.135

Length

695 amino acids

Sequence
(BLAST)

001: MASSAAAPSG APPAGKRPAS SGREGDQMVI TPLGAGSEVG RSCVHMTFKG RTVLFDCGIH PAYSGMAALP YFDEIDPSTI DVLLITHFHL DHAASLPYFL
101: EKTTFKGRVF MTHATKAIYR LLLSDYVKVS KVSVEDMLYD ENDIARSMEK IEVIDFHQTL EVNGIRFWCY TAGHVLGAAM FMVDIAGVRI LYTGDYSREE
201: DRHLRAAELP QFSPDICIIE STYGVQQHQP RIVREKRFTE VIHNTVSQGG RVLIPAFALG RAQELLLILD EYWSKHPELH KIPIYYASPL AKRCMAVYQT
301: YINSMNERIR NQFAQSNPFH FKHIESLNSI DNFHDVGPSV VMASPGGLQS GLSRQLFDKW CTDKKNACVI PGYVVEGTLA KTIINEPREV TLANGLTAPL
401: HMSVHYISFS AHADFPQTSN FLDELRPPNI ILVHGEANEM SRLKQKLKTQ FDGTNIVSPK NCQSVEMYFT CEKMAKTIGR LAEKVPEGGE SSGGLLVKKG
501: FTYQIMAPED LRVFTQLSTA NITQRIAVPY SGSFEVIKYR LKQIYESVES ATEESDVPAL IVHERVTVRL DSESYVTLQW SSDPISDMVS DSVVAMILNI
601: GREGPKVVPV EEAVKTKEET EKVAQKVVYA LMTSLFGDVK VTAEGKFVIS VDGNVAHLDG MSGDVKCENA TLKERIKTAF RRIQSAVRPI PLSAS

Best Arabidopsis Sequence Match ( AT1G61010.4 )
(BLAST)

001: MASSSTSLKR REQPISRDGD QLIVTPLGAG SEVGRSCVYM SFRGKNILFD CGIHPAYSGM AALPYFDEID PSSIDVLLIT HFHIDHAASL PYFLEKTTFN
101: GRVFMTHATK AIYKLLLTDY VKVSKVSVED MLFDEQDINK SMDKIEVIDF HQTVEVNGIK FWCYTAGHVL GAAMFMVDIA GVRILYTGDY SREEDRHLRA
201: AELPQFSPDI CIIESTSGVQ LHQSRHIREK RFTDVIHSTV AQGGRVLIPA FALGRAQELL LILDEYWANH PDLHNIPIYY ASPLAKKCMA VYQTYILSMN
301: DRIRNQFANS NPFVFKHISP LNSIDDFNDV GPSVVMATPG GLQSGLSRQL FDSWCSDKKN ACIIPGYMVE GTLAKTIINE PKEVTLMNGL TAPLNMQVHY
401: ISFSAHADYA QTSTFLKELM PPNIILVHGE ANEMMRLKQK LLTEFPDGNT KIMTPKNCES VEMYFNSEKL AKTIGRLAEK TPDVGDTVSG ILVKKGFTYQ
501: IMAPDELHVF SQLSTATVTQ RITIPFVGAF GVIKHRLEKI FESVEFSTDE ESGLPALKVH ERVTVKQESE KHISLQWSSD PISDMVSDSI VALILNISRE
601: VPKIVMEEED AVKSEEENGK KVEKVIYALL VSLFGDVKLG ENGKLVIRVD GNVAQLDKES GEVESEHSGL KERVRVAFER IQSAVKPIPL SAS

Arabidopsis Description

CPSF73-ICleavage and polyadenylation specificity factor subunit 3-I [Source:UniProtKB/Swiss-Prot;Acc:Q9C952]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.