Factsheet for TraesCS4A01G324800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G555600.1	Wheat	cytosol	99.13	99.13
TraesCS5B01G537400.1	Wheat	cytosol	99.13	99.13
HORVU5Hr1G123370.3	Barley	cytosol	95.52	98.07
Zm00001d034876_P001	Maize	plastid	90.9	90.24
EER90498	Sorghum	plastid	90.46	90.07
Os03t0852900-01	Rice	plastid	90.75	89.71
Zm00001d012831_P001	Maize	plastid	89.02	88.76
TraesCS4A01G336600.1	Wheat	cytosol	76.16	87.54
TraesCS5A01G358600.1	Wheat	cytosol, plasma membrane, plastid	81.94	84.75
GSMUA_Achr6P00420_001	Banana	cytosol, mitochondrion	76.88	82.48
VIT_12s0035g00190.t01	Wine grape	cytosol	81.21	80.98
VIT_12s0035g00030.t01	Wine grape	cytosol, plasma membrane, plastid	80.2	80.09
CDY03781	Canola	cytosol	77.17	77.28
AT1G61010.4	Thale cress	cytosol	77.31	77.2
VIT_12s0035g00170.t01	Wine grape	plastid	20.52	77.17
Bra031460.1-P	Field mustard	cytosol	77.31	77.09
CDY68459	Canola	cytosol	77.31	77.09
KRH26351	Soybean	nucleus	76.73	77.07
PGSC0003DMT400001821	Potato	cytosol	75.29	74.96
KRH44086	Soybean	cytosol	74.13	74.56
VIT_12s0035g00160.t01	Wine grape	cytosol	15.9	73.83
Solyc07g049480.2.1	Tomato	nucleus	75.43	71.41
CDY50214	Canola	cytosol	22.54	65.55
TraesCS5A01G203800.1	Wheat	cytosol	25.0	31.34
TraesCS5A01G453700.5	Wheat	cytosol	17.49	16.37

Protein Annotations

MapMan:16.2.1.2.3	MapMan:16.2.2.1.5	Gene3D:3.40.50.10890	Gene3D:3.60.15.10	InterPro:Beta_Casp	InterPro:CPSF73-100_C
InterPro:IPR036866	InterPro:Metallo-B-lactamas	PFAM:PF00753	PFAM:PF07521	PFAM:PF10996	PFAM:PF11718
PANTHER:PTHR11203	PANTHER:PTHR11203:SF11	InterPro:RMMBL	InterPro:RibonucZ/Hydroxyglut_hydro	SMART:SM00849	SMART:SM01027
SMART:SM01098	SUPFAM:SSF56281	EnsemblPlantsGene:TraesCS4A01G324800	EnsemblPlants:TraesCS4A01G324800.1	TIGR:cd16292	SEG:seg

Description

No Description!

Coordinates

chr4A:+:612110333..612114060

Molecular Weight (calculated)

77086.7 Da

IEP (calculated)

6.398

GRAVY (calculated)

-0.140

Length

692 amino acids

Sequence
(BLAST)

001: MASCATAPPA GKRPATGGRE GDQMVITPLG AGSEVGRSCV HMTFKGRTVL FDCGIHPAYS GMAALPYFDE IDPSAIDVLL VTHFHLDHAA SLPYFLEKTT
101: FKGRVFMTHA TKAIYRLLLS DYVKVSKVSV EDMLFDEQDI IRSMDKIEVI DFHQTLEVNG IRFWCYTAGH VLGAAMFMVD IAGVRILYTG DYSREEDRHL
201: KAAEIPQFSP DICIIESTYG VQQHQPRHVR EKRFTDAIHN TVSQGGRVLI PAFALGRAQE LLLILDEYWS NHPELHKIPI YYASPLAKKC MAVYQTYINS
301: MNERIRNQFA QSNPFHFKHI DPLNSIDNFH DVGPSVVMAS PGSLQSGLSR QLFDKWCTDK KNTCVIPGYA VEGSLAKTII NEPREVTLAN GLTAPLNMQI
401: FYISFSAHAD FPQTSGFLEE LRPPNIILVH GEANEMGRLK QKLITQFDGT NTKIVSPKNC QSVEMYFSSE KMAKTIGRLA EKVPEVGDTV SGLLVKKGFT
501: YQIMAPEDLR VYTQLSTANI TQRIAVPYSG SFEVIKYRLK QIYESVESSA EEDVPTLTVH ERVAIRLDSE RYVTLQWSSD PISDMVSDSV VAMILNIGRE
601: GPKVVPIEEA VKTEEETEKV ARKVVYSLMV SLFGDVKVAE EGKLVITVDG DVAHLDGRSG DVECENAGLK ERIKTAFRRI QGAVRPIPLS AS

Best Arabidopsis Sequence Match ( AT1G61010.4 )
(BLAST)

001: MASSSTSLKR REQPISRDGD QLIVTPLGAG SEVGRSCVYM SFRGKNILFD CGIHPAYSGM AALPYFDEID PSSIDVLLIT HFHIDHAASL PYFLEKTTFN
101: GRVFMTHATK AIYKLLLTDY VKVSKVSVED MLFDEQDINK SMDKIEVIDF HQTVEVNGIK FWCYTAGHVL GAAMFMVDIA GVRILYTGDY SREEDRHLRA
201: AELPQFSPDI CIIESTSGVQ LHQSRHIREK RFTDVIHSTV AQGGRVLIPA FALGRAQELL LILDEYWANH PDLHNIPIYY ASPLAKKCMA VYQTYILSMN
301: DRIRNQFANS NPFVFKHISP LNSIDDFNDV GPSVVMATPG GLQSGLSRQL FDSWCSDKKN ACIIPGYMVE GTLAKTIINE PKEVTLMNGL TAPLNMQVHY
401: ISFSAHADYA QTSTFLKELM PPNIILVHGE ANEMMRLKQK LLTEFPDGNT KIMTPKNCES VEMYFNSEKL AKTIGRLAEK TPDVGDTVSG ILVKKGFTYQ
501: IMAPDELHVF SQLSTATVTQ RITIPFVGAF GVIKHRLEKI FESVEFSTDE ESGLPALKVH ERVTVKQESE KHISLQWSSD PISDMVSDSI VALILNISRE
601: VPKIVMEEED AVKSEEENGK KVEKVIYALL VSLFGDVKLG ENGKLVIRVD GNVAQLDKES GEVESEHSGL KERVRVAFER IQSAVKPIPL SAS

Arabidopsis Description

CPSF73-ICleavage and polyadenylation specificity factor subunit 3-I [Source:UniProtKB/Swiss-Prot;Acc:Q9C952]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.