Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G536400.1 | Wheat | cytosol | 92.36 | 81.52 |
| TraesCS4A01G324800.1 | Wheat | cytosol | 87.54 | 76.16 |
| Os03t0852900-01 | Rice | plastid | 83.22 | 71.57 |
| EER90498 | Sorghum | plastid | 82.39 | 71.37 |
| Zm00001d034876_P001 | Maize | plastid | 82.56 | 71.31 |
| Zm00001d012831_P001 | Maize | plastid | 81.06 | 70.32 |
| TraesCS5A01G358600.1 | Wheat | cytosol, plasma membrane, plastid | 73.26 | 65.92 |
| VIT_12s0035g00160.t01 | Wine grape | cytosol | 15.95 | 64.43 |
| GSMUA_Achr6P00420_001 | Banana | cytosol, mitochondrion | 68.77 | 64.19 |
| VIT_12s0035g00190.t01 | Wine grape | cytosol | 73.42 | 63.69 |
| VIT_12s0035g00030.t01 | Wine grape | cytosol, plasma membrane, plastid | 72.76 | 63.2 |
| CDY03781 | Canola | cytosol | 70.43 | 61.36 |
| AT1G61010.4 | Thale cress | cytosol | 70.6 | 61.33 |
| KRH26351 | Soybean | nucleus | 70.1 | 61.25 |
| Bra031460.1-P | Field mustard | cytosol | 70.6 | 61.24 |
| CDY68459 | Canola | cytosol | 70.6 | 61.24 |
| KRH44086 | Soybean | cytosol | 67.44 | 59.01 |
| PGSC0003DMT400001821 | Potato | cytosol | 67.94 | 58.85 |
| CDY50214 | Canola | cytosol | 22.26 | 56.3 |
| Solyc07g049480.2.1 | Tomato | nucleus | 68.27 | 56.22 |
| VIT_12s0035g00170.t01 | Wine grape | plastid | 12.29 | 40.22 |
| TraesCS5A01G203800.1 | Wheat | cytosol | 23.09 | 25.18 |
| TraesCS5A01G453700.5 | Wheat | cytosol | 17.28 | 14.07 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G336600.1 | EnsemblPlantsGene:TraesCS4A01G336600 | Gene3D:3.40.50.10890 | Gene3D:3.60.15.10 | InterPro:Beta_Casp | InterPro:CPSF73-100_C |
| InterPro:IPR036866 | InterPro:RMMBL | InterPro:RibonucZ/Hydroxyglut_hydro | PANTHER:PTHR11203 | PANTHER:PTHR11203:SF11 | PFAM:PF07521 |
| PFAM:PF10996 | PFAM:PF11718 | SMART:SM01027 | SMART:SM01098 | SUPFAM:SSF56281 | MapMan:16.2.1.2.3 |
| MapMan:16.2.2.1.5 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4A:-:619147079..619160948
Molecular Weight (calculated)
66313.8 Da
IEP (calculated)
6.270
GRAVY (calculated)
-0.016
Length
602 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSPAPAASG GREGDGMLIT PLGGGSEVGR SCVHLSFKGR TVLFDCGIHP AYLGMASLPF FDEIDPAAVD VLLITQQVID FHQTLQVNGI RFWCYTAGHV
101: LGAAMFMVDI AGVRILYTGD YSREEDRHLK AAEIPQFFPD ICIIESTYGV QRHQPRHVRE KRFTDAIHNT VSQGGRVLIP AFALGRAQEL LLILDEYWSN
201: HPELHKIPIY YASPLAKNCM AVYQTYINSM NDRIRNQFAR SNPFHFKHID PLNSIDNFHD VGPSVVMASP GSLQSGLSTQ LFAAAFTNLY KNTCVIPGYA
301: VAGSLAKEII TEPRKVQLVN GLTAPLNMQI FYISFSAHAD FPQTSGFLGE LRPANIILVH GEANEMGRLR QKLITQFETA NQCSCKTAKA IGRLAEKVPE
401: VGDSVSGLLV KKGFTYQIMA PEDLRVHTQL STANITQRLA VPYSGSFEVI KYRLRQIYES VESSTDEANV PTLIVHERVT IRLDSESYVT PQWSSDPISD
501: MVSDSVVAMI LNIGREGPKA VPMEEETEMV AQKVVFALMV SVFGDVKVAE EGVLVITVDG DIAYLDGRSD DVECPNAALK ERIKTAFRRI QGAVRPIPLS
601: AS
101: LGAAMFMVDI AGVRILYTGD YSREEDRHLK AAEIPQFFPD ICIIESTYGV QRHQPRHVRE KRFTDAIHNT VSQGGRVLIP AFALGRAQEL LLILDEYWSN
201: HPELHKIPIY YASPLAKNCM AVYQTYINSM NDRIRNQFAR SNPFHFKHID PLNSIDNFHD VGPSVVMASP GSLQSGLSTQ LFAAAFTNLY KNTCVIPGYA
301: VAGSLAKEII TEPRKVQLVN GLTAPLNMQI FYISFSAHAD FPQTSGFLGE LRPANIILVH GEANEMGRLR QKLITQFETA NQCSCKTAKA IGRLAEKVPE
401: VGDSVSGLLV KKGFTYQIMA PEDLRVHTQL STANITQRLA VPYSGSFEVI KYRLRQIYES VESSTDEANV PTLIVHERVT IRLDSESYVT PQWSSDPISD
501: MVSDSVVAMI LNIGREGPKA VPMEEETEMV AQKVVFALMV SVFGDVKVAE EGVLVITVDG DIAYLDGRSD DVECPNAALK ERIKTAFRRI QGAVRPIPLS
601: AS
001: MASSSTSLKR REQPISRDGD QLIVTPLGAG SEVGRSCVYM SFRGKNILFD CGIHPAYSGM AALPYFDEID PSSIDVLLIT HFHIDHAASL PYFLEKTTFN
101: GRVFMTHATK AIYKLLLTDY VKVSKVSVED MLFDEQDINK SMDKIEVIDF HQTVEVNGIK FWCYTAGHVL GAAMFMVDIA GVRILYTGDY SREEDRHLRA
201: AELPQFSPDI CIIESTSGVQ LHQSRHIREK RFTDVIHSTV AQGGRVLIPA FALGRAQELL LILDEYWANH PDLHNIPIYY ASPLAKKCMA VYQTYILSMN
301: DRIRNQFANS NPFVFKHISP LNSIDDFNDV GPSVVMATPG GLQSGLSRQL FDSWCSDKKN ACIIPGYMVE GTLAKTIINE PKEVTLMNGL TAPLNMQVHY
401: ISFSAHADYA QTSTFLKELM PPNIILVHGE ANEMMRLKQK LLTEFPDGNT KIMTPKNCES VEMYFNSEKL AKTIGRLAEK TPDVGDTVSG ILVKKGFTYQ
501: IMAPDELHVF SQLSTATVTQ RITIPFVGAF GVIKHRLEKI FESVEFSTDE ESGLPALKVH ERVTVKQESE KHISLQWSSD PISDMVSDSI VALILNISRE
601: VPKIVMEEED AVKSEEENGK KVEKVIYALL VSLFGDVKLG ENGKLVIRVD GNVAQLDKES GEVESEHSGL KERVRVAFER IQSAVKPIPL SAS
101: GRVFMTHATK AIYKLLLTDY VKVSKVSVED MLFDEQDINK SMDKIEVIDF HQTVEVNGIK FWCYTAGHVL GAAMFMVDIA GVRILYTGDY SREEDRHLRA
201: AELPQFSPDI CIIESTSGVQ LHQSRHIREK RFTDVIHSTV AQGGRVLIPA FALGRAQELL LILDEYWANH PDLHNIPIYY ASPLAKKCMA VYQTYILSMN
301: DRIRNQFANS NPFVFKHISP LNSIDDFNDV GPSVVMATPG GLQSGLSRQL FDSWCSDKKN ACIIPGYMVE GTLAKTIINE PKEVTLMNGL TAPLNMQVHY
401: ISFSAHADYA QTSTFLKELM PPNIILVHGE ANEMMRLKQK LLTEFPDGNT KIMTPKNCES VEMYFNSEKL AKTIGRLAEK TPDVGDTVSG ILVKKGFTYQ
501: IMAPDELHVF SQLSTATVTQ RITIPFVGAF GVIKHRLEKI FESVEFSTDE ESGLPALKVH ERVTVKQESE KHISLQWSSD PISDMVSDSI VALILNISRE
601: VPKIVMEEED AVKSEEENGK KVEKVIYALL VSLFGDVKLG ENGKLVIRVD GNVAQLDKES GEVESEHSGL KERVRVAFER IQSAVKPIPL SAS
Arabidopsis Description
CPSF73-ICleavage and polyadenylation specificity factor subunit 3-I [Source:UniProtKB/Swiss-Prot;Acc:Q9C952]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.