Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G360900.1 | Wheat | cytosol | 87.59 | 84.56 |
| TraesCS5D01G367600.1 | Wheat | cytosol | 86.85 | 83.84 |
| TraesCS4A01G324800.1 | Wheat | cytosol | 84.75 | 81.94 |
| Os03t0852900-01 | Rice | plastid | 81.32 | 77.71 |
| EER90498 | Sorghum | plastid | 80.57 | 77.55 |
| Zm00001d034876_P001 | Maize | plastid | 80.72 | 77.47 |
| VIT_12s0035g00170.t01 | Wine grape | plastid | 21.23 | 77.17 |
| Zm00001d012831_P001 | Maize | plastid | 79.22 | 76.37 |
| HORVU5Hr1G088510.1 | Barley | mitochondrion, plastid | 77.58 | 73.51 |
| TraesCS4A01G336600.1 | Wheat | cytosol | 65.92 | 73.26 |
| VIT_12s0035g00190.t01 | Wine grape | cytosol | 73.24 | 70.61 |
| VIT_12s0035g00030.t01 | Wine grape | cytosol, plasma membrane, plastid | 72.8 | 70.27 |
| GSMUA_Achr6P00420_001 | Banana | cytosol, mitochondrion | 67.71 | 70.23 |
| VIT_12s0035g00160.t01 | Wine grape | cytosol | 15.4 | 69.13 |
| CDY03781 | Canola | cytosol | 69.66 | 67.44 |
| KRH26351 | Soybean | nucleus | 69.36 | 67.34 |
| Bra031460.1-P | Field mustard | cytosol | 69.81 | 67.29 |
| CDY68459 | Canola | cytosol | 69.81 | 67.29 |
| AT1G61010.4 | Thale cress | cytosol | 69.66 | 67.24 |
| PGSC0003DMT400001821 | Potato | cytosol | 69.36 | 66.76 |
| KRH44086 | Soybean | cytosol | 68.31 | 66.42 |
| Solyc07g049480.2.1 | Tomato | nucleus | 68.91 | 63.06 |
| CDY50214 | Canola | cytosol | 16.89 | 47.48 |
| TraesCS5A01G203800.1 | Wheat | cytosol | 23.92 | 28.99 |
| TraesCS5A01G453700.5 | Wheat | cytosol | 16.44 | 14.88 |
Protein Annotations
| MapMan:16.2.1.2.3 | MapMan:16.2.2.1.5 | Gene3D:3.40.50.10890 | Gene3D:3.60.15.10 | InterPro:Beta_Casp | InterPro:CPSF73-100_C |
| InterPro:IPR036866 | InterPro:Metallo-B-lactamas | PFAM:PF00753 | PFAM:PF07521 | PFAM:PF10996 | PFAM:PF11718 |
| PANTHER:PTHR11203 | PANTHER:PTHR11203:SF11 | InterPro:RMMBL | InterPro:RibonucZ/Hydroxyglut_hydro | SMART:SM00849 | SMART:SM01027 |
| SMART:SM01098 | SUPFAM:SSF56281 | EnsemblPlantsGene:TraesCS5A01G358600 | EnsemblPlants:TraesCS5A01G358600.1 | TIGR:cd16292 | SEG:seg |
Description
No Description!
Coordinates
chr5A:-:561109066..561112062
Molecular Weight (calculated)
74701.3 Da
IEP (calculated)
6.934
GRAVY (calculated)
-0.080
Length
669 amino acids
Sequence
(BLAST)
(BLAST)
001: MASVVMAPPA GKRPASGGRE GDHMVITPLG AGGEVGRSCV HMSFKGRTVL FDCGIHPAYS GMAALPYFDE IDPSAIDVLL VTHFHLDHAA SLPYFLEKTT
101: FKGRVFMTHA TKAIYRLLLS DYVKVSKVSV EDMLFDEQDI IRSMDKIEVI DFHQTLEVNG IRFWCYTAGH VLGAAMFMVD IAGVRILYTG DYSREEDRHL
201: KAAEVPQFSP DICIIESTYG VQQHQPRHIR EKRFTDAIHN TVSQGGRVLI PAYALGRAQE LLLILDEYWS NHPELHKIPI YYASPLAKKC MAVYQTYINS
301: MNERIRNQFA QSNPFHFKHI EPLNSIDNFH DVGPSVVMAS PGSLQSGLSR QLFDKWCTDK KNTCVIPGFA VEGSLVKAII SEPREVTLAN GLTAPLHMQI
401: FYISFSAHAD FLQTSGFLDE LRPPNIILVH GEANETGRLK QKLITQFDGT NTKIVSPKNC QSVEMYFSSE KMAKTIGRLA AKVPEVGESV SGLLVKKGFT
501: YQIMAPEDLR VYTQLSTTNI TQRISVPYSG SFEVIKYKLK QIYESVESST EEPDVPTLIV HERVTIRLES ESYVTLQWSS DSVSDMVSDS VVATILNIGR
601: EGPKAVPIEA AAKTEEEMEK VVQKVVYALI VSLLVMSKSQ RKGSLLCPWM ETSRIWRGGV VMSSVKMLH
101: FKGRVFMTHA TKAIYRLLLS DYVKVSKVSV EDMLFDEQDI IRSMDKIEVI DFHQTLEVNG IRFWCYTAGH VLGAAMFMVD IAGVRILYTG DYSREEDRHL
201: KAAEVPQFSP DICIIESTYG VQQHQPRHIR EKRFTDAIHN TVSQGGRVLI PAYALGRAQE LLLILDEYWS NHPELHKIPI YYASPLAKKC MAVYQTYINS
301: MNERIRNQFA QSNPFHFKHI EPLNSIDNFH DVGPSVVMAS PGSLQSGLSR QLFDKWCTDK KNTCVIPGFA VEGSLVKAII SEPREVTLAN GLTAPLHMQI
401: FYISFSAHAD FLQTSGFLDE LRPPNIILVH GEANETGRLK QKLITQFDGT NTKIVSPKNC QSVEMYFSSE KMAKTIGRLA AKVPEVGESV SGLLVKKGFT
501: YQIMAPEDLR VYTQLSTTNI TQRISVPYSG SFEVIKYKLK QIYESVESST EEPDVPTLIV HERVTIRLES ESYVTLQWSS DSVSDMVSDS VVATILNIGR
601: EGPKAVPIEA AAKTEEEMEK VVQKVVYALI VSLLVMSKSQ RKGSLLCPWM ETSRIWRGGV VMSSVKMLH
001: MASSSTSLKR REQPISRDGD QLIVTPLGAG SEVGRSCVYM SFRGKNILFD CGIHPAYSGM AALPYFDEID PSSIDVLLIT HFHIDHAASL PYFLEKTTFN
101: GRVFMTHATK AIYKLLLTDY VKVSKVSVED MLFDEQDINK SMDKIEVIDF HQTVEVNGIK FWCYTAGHVL GAAMFMVDIA GVRILYTGDY SREEDRHLRA
201: AELPQFSPDI CIIESTSGVQ LHQSRHIREK RFTDVIHSTV AQGGRVLIPA FALGRAQELL LILDEYWANH PDLHNIPIYY ASPLAKKCMA VYQTYILSMN
301: DRIRNQFANS NPFVFKHISP LNSIDDFNDV GPSVVMATPG GLQSGLSRQL FDSWCSDKKN ACIIPGYMVE GTLAKTIINE PKEVTLMNGL TAPLNMQVHY
401: ISFSAHADYA QTSTFLKELM PPNIILVHGE ANEMMRLKQK LLTEFPDGNT KIMTPKNCES VEMYFNSEKL AKTIGRLAEK TPDVGDTVSG ILVKKGFTYQ
501: IMAPDELHVF SQLSTATVTQ RITIPFVGAF GVIKHRLEKI FESVEFSTDE ESGLPALKVH ERVTVKQESE KHISLQWSSD PISDMVSDSI VALILNISRE
601: VPKIVMEEED AVKSEEENGK KVEKVIYALL VSLFGDVKLG ENGKLVIRVD GNVAQLDKES GEVESEHSGL KERVRVAFER IQSAVKPIPL SAS
101: GRVFMTHATK AIYKLLLTDY VKVSKVSVED MLFDEQDINK SMDKIEVIDF HQTVEVNGIK FWCYTAGHVL GAAMFMVDIA GVRILYTGDY SREEDRHLRA
201: AELPQFSPDI CIIESTSGVQ LHQSRHIREK RFTDVIHSTV AQGGRVLIPA FALGRAQELL LILDEYWANH PDLHNIPIYY ASPLAKKCMA VYQTYILSMN
301: DRIRNQFANS NPFVFKHISP LNSIDDFNDV GPSVVMATPG GLQSGLSRQL FDSWCSDKKN ACIIPGYMVE GTLAKTIINE PKEVTLMNGL TAPLNMQVHY
401: ISFSAHADYA QTSTFLKELM PPNIILVHGE ANEMMRLKQK LLTEFPDGNT KIMTPKNCES VEMYFNSEKL AKTIGRLAEK TPDVGDTVSG ILVKKGFTYQ
501: IMAPDELHVF SQLSTATVTQ RITIPFVGAF GVIKHRLEKI FESVEFSTDE ESGLPALKVH ERVTVKQESE KHISLQWSSD PISDMVSDSI VALILNISRE
601: VPKIVMEEED AVKSEEENGK KVEKVIYALL VSLFGDVKLG ENGKLVIRVD GNVAQLDKES GEVESEHSGL KERVRVAFER IQSAVKPIPL SAS
Arabidopsis Description
CPSF73-ICleavage and polyadenylation specificity factor subunit 3-I [Source:UniProtKB/Swiss-Prot;Acc:Q9C952]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.