Factsheet for HORVU5Hr1G088510.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G360900.1	Wheat	cytosol	85.69	87.3
TraesCS5D01G367600.1	Wheat	cytosol	85.41	87.01
HORVU5Hr1G123370.3	Barley	cytosol	82.86	86.8
Os03t0852900-01	Rice	plastid	81.3	82.0
Zm00001d034876_P001	Maize	plastid	79.89	80.92
EER90498	Sorghum	plastid	79.6	80.86
Zm00001d012831_P001	Maize	plastid	78.19	79.54
TraesCS5A01G358600.1	Wheat	cytosol, plasma membrane, plastid	73.51	77.58
GSMUA_Achr6P00420_001	Banana	cytosol, mitochondrion	67.99	74.42
VIT_12s0035g00190.t01	Wine grape	cytosol	72.38	73.63
VIT_12s0035g00030.t01	Wine grape	cytosol, plasma membrane, plastid	71.53	72.87
VIT_12s0035g00160.t01	Wine grape	cytosol	15.01	71.14
CDY03781	Canola	cytosol	69.41	70.91
Bra031460.1-P	Field mustard	cytosol	69.55	70.75
CDY68459	Canola	cytosol	69.55	70.75
AT1G61010.4	Thale cress	cytosol	68.98	70.27
KRH26351	Soybean	nucleus	68.13	69.81
KRH44086	Soybean	cytosol	67.71	69.48
PGSC0003DMT400001821	Potato	cytosol	67.71	68.78
Solyc07g049480.2.1	Tomato	nucleus	67.56	65.25
CDY50214	Canola	cytosol	21.67	64.29
VIT_12s0035g00170.t01	Wine grape	plastid	14.45	55.43
HORVU5Hr1G060590.1	Barley	cytosol	11.47	40.91
HORVU5Hr1G060570.5	Barley	cytosol	21.81	27.55
HORVU5Hr1G109220.1	Barley	plastid	15.72	14.09

Protein Annotations

MapMan:16.2.1.2.3	MapMan:16.2.2.1.5	Gene3D:3.40.50.10890	Gene3D:3.60.15.10	UniProt:A0A287S6T1	InterPro:Beta_Casp
InterPro:CPSF73-100_C	EnsemblPlantsGene:HORVU5Hr1G088510	EnsemblPlants:HORVU5Hr1G088510.1	InterPro:IPR036866	InterPro:Metallo-B-lactamas	PFAM:PF07521
PFAM:PF10996	PFAM:PF11718	PFAM:PF16661	PANTHER:PTHR11203	PANTHER:PTHR11203:SF11	InterPro:RMMBL
InterPro:RibonucZ/Hydroxyglut_hydro	SMART:SM01027	SMART:SM01098	SUPFAM:SSF56281	UniParc:UPI000B47481E	SEG:seg

Description

No Description!

Coordinates

chrchr5H:-:581965903..581969132

Molecular Weight (calculated)

78732.1 Da

IEP (calculated)

7.496

GRAVY (calculated)

-0.235

Length

706 amino acids

Sequence
(BLAST)

001: ASGRATTWWS RRWGPAARSA APASTCPSRA APSSSTAAST RPTPAWRRCP TSTRSTPPPS TSSSSPSEQP HLLRPHLPKH ICVPAAKFPA LDWNCSFHLD
101: HAASLPYFLE KTTFKGRVFM THATKAIYRL LLSDYVKVSK VSVEDMLFDE QDVIRSMDKI EVIDFHQTLE VNGIRFWCYT AGHVLGAAMF MVDIAGVRIL
201: YTGDYSREED RHLKAAEVPQ FSPDICIIES TYGVQQHQPR HVREKRFTDA IHNTVSQGGR VLIPAYALGR AQELLLILDE YWSNHPELHK IPIYYASPLA
301: KKCMAVYQTY INSMNERIRN QFAQSNPFHF KHIEPLNSID NFHDVGPSVV MASPGSLQSG LSRQLFDKWC TDKKNTCVIP GFAVEGSLVK TIINEPREVT
401: LANGLTAPLH MQIFYISFSA HADFLQTSGF LDELRPPNII LVHGEANEMG RLKQKLTTQF DGTNTKIVSP KNCQSVEMYF SSEKMAKTIG RLAEKVPEVG
501: ESVSGLLVKK GFTYQIMAPE DLRVYTQLST TNITQRISVP YSGSFEVIKY RLKRIYESVE SSTKEPDVPT LIVHERVTIR LESEIHVTLQ WSSDSISDMV
601: SDSVVAMILN IGRQGPKVVP IEEAAKTEEE TEKVAQKVVY ALMASLFGDV KVAEEGELVI SVDGDVAHLD GRSGDVECEN AALKERISTA FRRIQGAVRP
701: IPLSAS

Best Arabidopsis Sequence Match ( AT1G61010.1 )
(BLAST)

001: MASSSTSLKR REQPISRDGD QLIVTPLGAG SEVGRSCVYM SFRGKNILFD CGIHPAYSGM AALPYFDEID PSSIDVLLIT HFHIDHAASL PYFLEKTTFN
101: GRVFMTHATK AIYKLLLTDY VKVSKVSVED MLFDEQDINK SMDKIEVIDF HQTVEVNGIK FWCYTAGHVL GAAMFMVDIA GVRILYTGDY SREEDRHLRA
201: AELPQFSPDI CIIESTSGVQ LHQSRHIREK RFTDVIHSTV AQGGRVLIPA FALGRAQELL LILDEYWANH PDLHNIPIYY ASPLAKKCMA VYQTYILSMN
301: DRIRNQFANS NPFVFKHISP LNSIDDFNDV GPSVVMATPG GLQSGLSRQL FDSWCSDKKN ACIIPGYMVE GTLAKTIINE PKEVTLMNGL TAPLNMQVHY
401: ISFSAHADYA QTSTFLKELM PPNIILVHGE ANEMMRLKQK LLTEFPDGNT KIMTPKNCES VEMYFNSEKL AKTIGRLAEK TPDVGDTVSG ILVKKGFTYQ
501: IMAPDELHVF SQLSTATVTQ RITIPFVGAF GVIKHRLEKI FESVEFSTDE ESGLPALKVH ERVTVKQESE KHISLQWSSD PISDMVSDSI VALILNISRE
601: VPKIVMEEED AVKSEEENGK KVEKVIYALL VSLFGDVKLG ENGKLVIRVD GNVAQLDKES GEVESEHSGL KERVRVAFER IQSAVKPIPL SAS

Arabidopsis Description

CPSF73-ICleavage and polyadenylation specificity factor subunit 3-I [Source:UniProtKB/Swiss-Prot;Acc:Q9C952]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.