Factsheet for VIT_12s0035g00170.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0011g05780.t01	Wine grape	cytosol	20.11	39.36
GSMUA_Achr6P00420_001	Banana	cytosol, mitochondrion	78.8	22.48
VIT_12s0035g00030.t01	Wine grape	cytosol, plasma membrane, plastid	82.61	21.93
VIT_12s0035g00190.t01	Wine grape	cytosol	82.61	21.9
TraesCS5A01G358600.1	Wheat	cytosol, plasma membrane, plastid	77.17	21.23
HORVU5Hr1G123370.3	Barley	cytosol	76.09	20.77
KRH26351	Soybean	nucleus	77.72	20.75
Os03t0852900-01	Rice	plastid	78.8	20.71
CDY03781	Canola	cytosol	77.17	20.55
TraesCS5B01G537400.1	Wheat	cytosol	77.17	20.52
TraesCS5D01G555600.1	Wheat	cytosol	77.17	20.52
TraesCS4A01G324800.1	Wheat	cytosol	77.17	20.52
Bra031460.1-P	Field mustard	cytosol	77.17	20.46
CDY68459	Canola	cytosol	77.17	20.46
AT1G61010.4	Thale cress	cytosol	76.63	20.35
TraesCS5D01G367600.1	Wheat	cytosol	76.63	20.35
TraesCS5B01G360900.1	Wheat	cytosol	76.09	20.2
EER90498	Sorghum	plastid	76.09	20.14
Zm00001d034876_P001	Maize	plastid	76.09	20.09
Zm00001d012831_P001	Maize	plastid	75.0	19.88
KRH44086	Soybean	cytosol	73.91	19.77
TraesCS5B01G536400.1	Wheat	cytosol	69.57	18.77
HORVU5Hr1G088510.1	Barley	mitochondrion, plastid	55.43	14.45
TraesCS4A01G336600.1	Wheat	cytosol	40.22	12.29
VIT_16s0050g00590.t01	Wine grape	cytosol	20.11	5.0
CDY50214	Canola	cytosol	1.09	0.84
VIT_12s0035g00160.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

ArrayExpress:VIT_12s0035g00170	EMBL:FN595990	EnsemblPlants:VIT_12s0035g00170.t01	EnsemblPlantsGene:VIT_12s0035g00170	Gene3D:3.60.15.10	InterPro:IPR036866
InterPro:Metallo-B-lactamas	InterPro:RibonucZ/Hydroxyglut_hydro	PANTHER:PTHR11203	PANTHER:PTHR11203:SF11	PFAM:PF00753	ProteinID:CBI29775
ProteinID:CBI29775.3	SUPFAM:SSF56281	UniParc:UPI0001BE387B	UniProt:D7TH03	MapMan:35.1	:

Description

No Description!

Coordinates

chr12:-:19393309..19401873

Molecular Weight (calculated)

20415.7 Da

IEP (calculated)

5.485

GRAVY (calculated)

0.146

Length

184 amino acids

Sequence
(BLAST)

001: MASTGPPQSL KRSDSSLTRV GDQPIITPLG AGNEVGRSCV YMSYKGKTIL IDCGIHRAYS GMAALPNFNE IDPSTIDVLL VTHFHLDHAA SLPYFLEKTT
101: FNGQVFMTHA MKAIYKLLLS DYVKVSIVSV EDMLYDEQDI LRSMDKIEVI DFHQTLEVNG IQFWCYTTGH VLSAAMFMVD IAGV

Best Arabidopsis Sequence Match ( AT1G61010.4 )
(BLAST)

001: MASSSTSLKR REQPISRDGD QLIVTPLGAG SEVGRSCVYM SFRGKNILFD CGIHPAYSGM AALPYFDEID PSSIDVLLIT HFHIDHAASL PYFLEKTTFN
101: GRVFMTHATK AIYKLLLTDY VKVSKVSVED MLFDEQDINK SMDKIEVIDF HQTVEVNGIK FWCYTAGHVL GAAMFMVDIA GVRILYTGDY SREEDRHLRA
201: AELPQFSPDI CIIESTSGVQ LHQSRHIREK RFTDVIHSTV AQGGRVLIPA FALGRAQELL LILDEYWANH PDLHNIPIYY ASPLAKKCMA VYQTYILSMN
301: DRIRNQFANS NPFVFKHISP LNSIDDFNDV GPSVVMATPG GLQSGLSRQL FDSWCSDKKN ACIIPGYMVE GTLAKTIINE PKEVTLMNGL TAPLNMQVHY
401: ISFSAHADYA QTSTFLKELM PPNIILVHGE ANEMMRLKQK LLTEFPDGNT KIMTPKNCES VEMYFNSEKL AKTIGRLAEK TPDVGDTVSG ILVKKGFTYQ
501: IMAPDELHVF SQLSTATVTQ RITIPFVGAF GVIKHRLEKI FESVEFSTDE ESGLPALKVH ERVTVKQESE KHISLQWSSD PISDMVSDSI VALILNISRE
601: VPKIVMEEED AVKSEEENGK KVEKVIYALL VSLFGDVKLG ENGKLVIRVD GNVAQLDKES GEVESEHSGL KERVRVAFER IQSAVKPIPL SAS

Arabidopsis Description

CPSF73-ICleavage and polyadenylation specificity factor subunit 3-I [Source:UniProtKB/Swiss-Prot;Acc:Q9C952]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.