CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68459	Canola	cytosol	89.08	30.55
CDY03781	Canola	cytosol	88.66	30.54
AT1G61010.4	Thale cress	cytosol	84.03	28.86
VIT_12s0035g00160.t01	Wine grape	cytosol	15.97	25.5
KRH44086	Soybean	cytosol	71.01	24.56
KRH26351	Soybean	nucleus	70.59	24.38
PGSC0003DMT400001821	Potato	cytosol	67.65	23.17
HORVU5Hr1G123370.3	Barley	cytosol	64.71	22.85
TraesCS5D01G555600.1	Wheat	cytosol	65.55	22.54
TraesCS5B01G537400.1	Wheat	cytosol	65.55	22.54
TraesCS4A01G324800.1	Wheat	cytosol	65.55	22.54
TraesCS4A01G336600.1	Wheat	cytosol	56.3	22.26
Zm00001d034876_P001	Maize	plastid	65.13	22.24
EER90498	Sorghum	plastid	64.71	22.16
Solyc07g049480.2.1	Tomato	nucleus	67.65	22.02
Os03t0852900-01	Rice	plastid	64.71	22.0
HORVU5Hr1G088510.1	Barley	mitochondrion, plastid	64.29	21.67
TraesCS5D01G367600.1	Wheat	cytosol	63.03	21.64
TraesCS5B01G536400.1	Wheat	cytosol	61.76	21.55
TraesCS5B01G360900.1	Wheat	cytosol	62.18	21.36
Zm00001d012831_P001	Maize	plastid	62.18	21.33
GSMUA_Achr6P00420_001	Banana	cytosol, mitochondrion	54.62	20.16
TraesCS5A01G358600.1	Wheat	cytosol, plasma membrane, plastid	47.48	16.89
CDY66642	Canola	cytosol	13.45	5.2
CDY09421	Canola	cytosol	13.45	5.2
CDX88053	Canola	cytosol	9.24	2.98
CDX80392	Canola	cytosol	9.24	2.98
VIT_12s0035g00170.t01	Wine grape	plastid	0.84	1.09

Protein Annotations

EnsemblPlants:CDY50214	EnsemblPlantsGene:GSBRNA2T00096173001	Gene3D:3.60.15.10	InterPro:CPSF73-100_C	InterPro:IPR036866	InterPro:RMMBL
InterPro:RibonucZ/Hydroxyglut_hydro	PANTHER:PTHR11203	PANTHER:PTHR11203:SF11	PFAM:PF07521	PFAM:PF11718	ProteinID:CDY50214
ProteinID:CDY50214.1	SMART:SM01098	SUPFAM:SSF56281	UniParc:UPI0004EE29FC	UniProt:A0A078ILJ9	MapMan:35.1

Description

BnaCnng18960DBnaCnng18960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ILJ9]

Coordinates

chrLK032890:+:103782..104704

Molecular Weight (calculated)

26394.7 Da

IEP (calculated)

4.868

GRAVY (calculated)

-0.084

Length

238 amino acids

Sequence
(BLAST)

001: MNGLAALLNM QVHYISFSAH ADYAQMSTFL KELMPLDIVL VHGEANELMR LTQKLFTEFP DGNTRIMNPK NCESVEKYFT LEKMEKTIGR LAEKTLDVGD
101: SVSGILVKKG FTYQIMAPDD LHVFSQLSTG TVTQRITIPL SGAFGKHISL QWSSDPISDM VSDPIVALVL NISREVPKIV VEEEVDNGKL VISVDDNVAH
201: LDKESGDVES EHDGLNERVR VAFHRIQSAV KPIPLSAD

Best Arabidopsis Sequence Match ( AT1G61010.4 )
(BLAST)

001: MASSSTSLKR REQPISRDGD QLIVTPLGAG SEVGRSCVYM SFRGKNILFD CGIHPAYSGM AALPYFDEID PSSIDVLLIT HFHIDHAASL PYFLEKTTFN
101: GRVFMTHATK AIYKLLLTDY VKVSKVSVED MLFDEQDINK SMDKIEVIDF HQTVEVNGIK FWCYTAGHVL GAAMFMVDIA GVRILYTGDY SREEDRHLRA
201: AELPQFSPDI CIIESTSGVQ LHQSRHIREK RFTDVIHSTV AQGGRVLIPA FALGRAQELL LILDEYWANH PDLHNIPIYY ASPLAKKCMA VYQTYILSMN
301: DRIRNQFANS NPFVFKHISP LNSIDDFNDV GPSVVMATPG GLQSGLSRQL FDSWCSDKKN ACIIPGYMVE GTLAKTIINE PKEVTLMNGL TAPLNMQVHY
401: ISFSAHADYA QTSTFLKELM PPNIILVHGE ANEMMRLKQK LLTEFPDGNT KIMTPKNCES VEMYFNSEKL AKTIGRLAEK TPDVGDTVSG ILVKKGFTYQ
501: IMAPDELHVF SQLSTATVTQ RITIPFVGAF GVIKHRLEKI FESVEFSTDE ESGLPALKVH ERVTVKQESE KHISLQWSSD PISDMVSDSI VALILNISRE
601: VPKIVMEEED AVKSEEENGK KVEKVIYALL VSLFGDVKLG ENGKLVIRVD GNVAQLDKES GEVESEHSGL KERVRVAFER IQSAVKPIPL SAS

Arabidopsis Description

CPSF73-ICleavage and polyadenylation specificity factor subunit 3-I [Source:UniProtKB/Swiss-Prot;Acc:Q9C952]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.