Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G336600.1 | Wheat | cytosol | 81.52 | 92.36 |
| TraesCS5B01G537400.1 | Wheat | cytosol | 90.03 | 88.73 |
| TraesCS5B01G360900.1 | Wheat | cytosol | 88.71 | 87.3 |
| EER90498 | Sorghum | plastid | 84.46 | 82.88 |
| Os03t0852900-01 | Rice | plastid | 84.9 | 82.71 |
| Zm00001d034876_P001 | Maize | plastid | 84.31 | 82.5 |
| Zm00001d012831_P001 | Maize | plastid | 83.43 | 81.99 |
| GSMUA_Achr6P00420_001 | Banana | cytosol, mitochondrion | 71.11 | 75.19 |
| VIT_12s0035g00190.t01 | Wine grape | cytosol | 75.51 | 74.21 |
| VIT_12s0035g00030.t01 | Wine grape | cytosol, plasma membrane, plastid | 74.93 | 73.74 |
| CDY03781 | Canola | cytosol | 72.73 | 71.78 |
| Bra031460.1-P | Field mustard | cytosol | 72.87 | 71.61 |
| CDY68459 | Canola | cytosol | 72.87 | 71.61 |
| KRH26351 | Soybean | nucleus | 72.14 | 71.41 |
| AT1G61010.4 | Thale cress | cytosol | 72.43 | 71.28 |
| KRH44086 | Soybean | cytosol | 70.23 | 69.62 |
| VIT_12s0035g00170.t01 | Wine grape | plastid | 18.77 | 69.57 |
| PGSC0003DMT400001821 | Potato | cytosol | 70.38 | 69.06 |
| VIT_12s0035g00160.t01 | Wine grape | cytosol | 14.96 | 68.46 |
| Solyc07g049480.2.1 | Tomato | nucleus | 70.82 | 66.07 |
| CDY50214 | Canola | cytosol | 21.55 | 61.76 |
| TraesCS5B01G202500.1 | Wheat | cytosol | 19.94 | 29.63 |
| TraesCS5B01G462500.2 | Wheat | cytosol | 17.6 | 16.24 |
Protein Annotations
| MapMan:16.2.1.2.3 | MapMan:16.2.2.1.5 | Gene3D:3.40.50.10890 | Gene3D:3.60.15.10 | InterPro:Beta_Casp | InterPro:CPSF73-100_C |
| InterPro:IPR036866 | InterPro:Metallo-B-lactamas | PFAM:PF00753 | PFAM:PF07521 | PFAM:PF10996 | PFAM:PF11718 |
| PANTHER:PTHR11203 | PANTHER:PTHR11203:SF11 | InterPro:RMMBL | InterPro:RibonucZ/Hydroxyglut_hydro | SMART:SM00849 | SMART:SM01027 |
| SMART:SM01098 | SUPFAM:SSF56281 | EnsemblPlantsGene:TraesCS5B01G536400 | EnsemblPlants:TraesCS5B01G536400.1 | TIGR:cd16292 | SEG:seg |
Description
No Description!
Coordinates
chr5B:-:692509114..692511687
Molecular Weight (calculated)
75386.8 Da
IEP (calculated)
6.474
GRAVY (calculated)
-0.029
Length
682 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSLATAPAP AASGGREGDE MVITPLGAGS EVGRSCVHLS FKGRTVLFDC GIHPAYPGMA SLPFFDEIDP AAVDVLLITH FHLDHAAALP YFLEKTAFKG
101: RVFMTHATKA IYRLLLSDYI KVSKVSAENM LFDEQDIVSS MEKIEVIDFH QTLEVNGIRF WCYTAGHVLG AAMFMVDIAG VRILYTGDYS RDRHLKAAEI
201: PQFSPDICII ESTYGVQRHQ PRHVREKRFT DAIHNIVSQG GRVLIPAFAL GRAQELLLIL DEYWSNHPEL HKIPIYYASP LAKKCMAVYQ TYINSMNDRI
301: RNQFARSNPF HFKHIDPLSS IDNFHDVGPS VVMASPGSLQ SGLSRQLFDK WCTDKKNTCV IPGYAVAGSL AKEIITEPRK VQLANGLTAP LNMQIFYISF
401: SAHADFPQTS GFLGELRPAN IILVHGEANE MGRLRQKLIT QFEGTDTQIV SPKNCQPVQL YFSSDKMAKA IGRLAEKVPE VGDSVSGLLV KKGFTYQIMA
501: PEDLRVHTQL STTNITQRLA VPYCGSFEVI KYRLRQIYES VESSTDEADV PTLIVHERVT IRLDSESYVT LQWSSDPISD MVSDSVVAMI LNIGREGPKA
601: VPMEEETEMV AQKVVYALMV SVFGDVQVAG EGKLVITVDG DVAHLDGRSG DVECANAALK GRIETAFHRI QGAVRPIPLS AS
101: RVFMTHATKA IYRLLLSDYI KVSKVSAENM LFDEQDIVSS MEKIEVIDFH QTLEVNGIRF WCYTAGHVLG AAMFMVDIAG VRILYTGDYS RDRHLKAAEI
201: PQFSPDICII ESTYGVQRHQ PRHVREKRFT DAIHNIVSQG GRVLIPAFAL GRAQELLLIL DEYWSNHPEL HKIPIYYASP LAKKCMAVYQ TYINSMNDRI
301: RNQFARSNPF HFKHIDPLSS IDNFHDVGPS VVMASPGSLQ SGLSRQLFDK WCTDKKNTCV IPGYAVAGSL AKEIITEPRK VQLANGLTAP LNMQIFYISF
401: SAHADFPQTS GFLGELRPAN IILVHGEANE MGRLRQKLIT QFEGTDTQIV SPKNCQPVQL YFSSDKMAKA IGRLAEKVPE VGDSVSGLLV KKGFTYQIMA
501: PEDLRVHTQL STTNITQRLA VPYCGSFEVI KYRLRQIYES VESSTDEADV PTLIVHERVT IRLDSESYVT LQWSSDPISD MVSDSVVAMI LNIGREGPKA
601: VPMEEETEMV AQKVVYALMV SVFGDVQVAG EGKLVITVDG DVAHLDGRSG DVECANAALK GRIETAFHRI QGAVRPIPLS AS
001: MASSSTSLKR REQPISRDGD QLIVTPLGAG SEVGRSCVYM SFRGKNILFD CGIHPAYSGM AALPYFDEID PSSIDVLLIT HFHIDHAASL PYFLEKTTFN
101: GRVFMTHATK AIYKLLLTDY VKVSKVSVED MLFDEQDINK SMDKIEVIDF HQTVEVNGIK FWCYTAGHVL GAAMFMVDIA GVRILYTGDY SREEDRHLRA
201: AELPQFSPDI CIIESTSGVQ LHQSRHIREK RFTDVIHSTV AQGGRVLIPA FALGRAQELL LILDEYWANH PDLHNIPIYY ASPLAKKCMA VYQTYILSMN
301: DRIRNQFANS NPFVFKHISP LNSIDDFNDV GPSVVMATPG GLQSGLSRQL FDSWCSDKKN ACIIPGYMVE GTLAKTIINE PKEVTLMNGL TAPLNMQVHY
401: ISFSAHADYA QTSTFLKELM PPNIILVHGE ANEMMRLKQK LLTEFPDGNT KIMTPKNCES VEMYFNSEKL AKTIGRLAEK TPDVGDTVSG ILVKKGFTYQ
501: IMAPDELHVF SQLSTATVTQ RITIPFVGAF GVIKHRLEKI FESVEFSTDE ESGLPALKVH ERVTVKQESE KHISLQWSSD PISDMVSDSI VALILNISRE
601: VPKIVMEEED AVKSEEENGK KVEKVIYALL VSLFGDVKLG ENGKLVIRVD GNVAQLDKES GEVESEHSGL KERVRVAFER IQSAVKPIPL SAS
101: GRVFMTHATK AIYKLLLTDY VKVSKVSVED MLFDEQDINK SMDKIEVIDF HQTVEVNGIK FWCYTAGHVL GAAMFMVDIA GVRILYTGDY SREEDRHLRA
201: AELPQFSPDI CIIESTSGVQ LHQSRHIREK RFTDVIHSTV AQGGRVLIPA FALGRAQELL LILDEYWANH PDLHNIPIYY ASPLAKKCMA VYQTYILSMN
301: DRIRNQFANS NPFVFKHISP LNSIDDFNDV GPSVVMATPG GLQSGLSRQL FDSWCSDKKN ACIIPGYMVE GTLAKTIINE PKEVTLMNGL TAPLNMQVHY
401: ISFSAHADYA QTSTFLKELM PPNIILVHGE ANEMMRLKQK LLTEFPDGNT KIMTPKNCES VEMYFNSEKL AKTIGRLAEK TPDVGDTVSG ILVKKGFTYQ
501: IMAPDELHVF SQLSTATVTQ RITIPFVGAF GVIKHRLEKI FESVEFSTDE ESGLPALKVH ERVTVKQESE KHISLQWSSD PISDMVSDSI VALILNISRE
601: VPKIVMEEED AVKSEEENGK KVEKVIYALL VSLFGDVKLG ENGKLVIRVD GNVAQLDKES GEVESEHSGL KERVRVAFER IQSAVKPIPL SAS
Arabidopsis Description
CPSF73-ICleavage and polyadenylation specificity factor subunit 3-I [Source:UniProtKB/Swiss-Prot;Acc:Q9C952]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.