Factsheet for VIT_12s0035g00190.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0035g00030.t01	Wine grape	cytosol, plasma membrane, plastid	97.55	97.69
GSMUA_Achr6P00420_001	Banana	cytosol, mitochondrion	78.96	84.96
VIT_12s0035g00160.t01	Wine grape	cytosol	18.01	83.89
VIT_12s0035g00170.t01	Wine grape	plastid	21.9	82.61
PGSC0003DMT400001821	Potato	cytosol	82.71	82.59
HORVU5Hr1G123370.3	Barley	cytosol	79.97	82.34
TraesCS5D01G555600.1	Wheat	cytosol	81.27	81.5
TraesCS4A01G324800.1	Wheat	cytosol	80.98	81.21
TraesCS5B01G537400.1	Wheat	cytosol	80.84	81.07
Os03t0852900-01	Rice	plastid	81.56	80.86
Zm00001d034876_P001	Maize	plastid	80.55	80.2
EER90498	Sorghum	plastid	80.26	80.14
Zm00001d012831_P001	Maize	plastid	79.39	79.39
TraesCS5D01G367600.1	Wheat	cytosol	79.11	79.22
TraesCS5B01G360900.1	Wheat	cytosol	78.82	78.93
Solyc07g049480.2.1	Tomato	nucleus	82.28	78.11
TraesCS5B01G536400.1	Wheat	cytosol	74.21	75.51
TraesCS4A01G336600.1	Wheat	cytosol	63.69	73.42
TraesCS5A01G358600.1	Wheat	cytosol, plasma membrane, plastid	70.61	73.24
HORVU5Hr1G088510.1	Barley	mitochondrion, plastid	73.63	72.38
VIT_01s0011g05780.t01	Wine grape	cytosol	5.48	40.43
VIT_16s0050g00590.t01	Wine grape	cytosol	18.59	17.43

Protein Annotations

EntrezGene:100266252	wikigene:100266252	MapMan:16.2.1.2.3	MapMan:16.2.2.1.5	Gene3D:3.40.50.10890	Gene3D:3.60.15.10
EMBL:AM428671	InterPro:Beta_Casp	ProteinID:CAN71414	ProteinID:CAN71414.1	ProteinID:CCB55086	ProteinID:CCB55086.1
InterPro:CPSF73-100_C	UniProt:F6HK83	EMBL:FN595990	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR036866	EntrezGene:LOC100266252	wikigene:LOC100266252	InterPro:Metallo-B-lactamas	PFAM:PF00753	PFAM:PF07521
PFAM:PF10996	PFAM:PF11718	PANTHER:PTHR11203	PANTHER:PTHR11203:SF11	InterPro:RMMBL	InterPro:RibonucZ/Hydroxyglut_hydro
SMART:SM00849	SMART:SM01027	SMART:SM01098	SUPFAM:SSF56281	UniParc:UPI0002108DF6	ArrayExpress:VIT_12s0035g00190
EnsemblPlantsGene:VIT_12s0035g00190	EnsemblPlants:VIT_12s0035g00190.t01	RefSeq:XP_003633408	RefSeq:XP_003633408.1	RefSeq:XP_010658077.1	RefSeq:XP_010658078.1

Description

No Description!

Coordinates

chr12:-:19417225..19422927

Molecular Weight (calculated)

77620.4 Da

IEP (calculated)

6.611

GRAVY (calculated)

-0.156

Length

694 amino acids

Sequence
(BLAST)

001: MASTGPPQSL KRPDSSLTRE GDQLIITPLG AGNEVGRSCV YMSYKGKTIL FDCGIHPAYS GMAALPYFDE IDPSTIDVLL VTHFHLDHAA SLPYFLEKTT
101: FKGRVFMTHA TKAIYKLLLS DYVKVSKVSV EDMLYDEQDI LRSMDKIEVI DFHQTLEVNG IRFWCYTAGH VLGAAMFMVD IAGVRVLYTG DYSREEDRHL
201: RAAEIPQFSP DICIIESTYG VQLHQPRHVR EKRFTDVIHS TISQGGRVLI PAFALGRAQE LLLILDEYWS NHPELHNIPI YYASPLAKRC MAVYQTYINS
301: MNERIRNQFA NSNPFDFKHI SPLKSIENFN DVGPSVVMAS PSGLQSGLSR QLFDMWCSDK KNACVIPGYV VEGTLAKTII NEPKEVTLMN GLTAPLNMQV
401: HYISFSAHAD FAQTSTFLKE LMPPNIILVH GEANEMGRLK QKLITQFADR NTKIISPKNC QSVEMYFNSE KMAKTIGRLA EKTPGVGETV SGLLVKKGFT
501: YQIMAPDDLH VFSQLSTANV TQRITIPYTG AFGVIKHRLK QIYESVESLP DEESEVPAFR VHERVTVKHE SEKHISLHWT SDPISDMVSD SIVALVLNIS
601: REIPKVVVES EAIKTEEENG KKAEKVIHAL LVSLFGDVKL GENGNLVISV DGNVAHLDKQ SGNVESENEG LKERVRVAFQ RIQNAVKPIP LSVS

Best Arabidopsis Sequence Match ( AT1G61010.4 )
(BLAST)

001: MASSSTSLKR REQPISRDGD QLIVTPLGAG SEVGRSCVYM SFRGKNILFD CGIHPAYSGM AALPYFDEID PSSIDVLLIT HFHIDHAASL PYFLEKTTFN
101: GRVFMTHATK AIYKLLLTDY VKVSKVSVED MLFDEQDINK SMDKIEVIDF HQTVEVNGIK FWCYTAGHVL GAAMFMVDIA GVRILYTGDY SREEDRHLRA
201: AELPQFSPDI CIIESTSGVQ LHQSRHIREK RFTDVIHSTV AQGGRVLIPA FALGRAQELL LILDEYWANH PDLHNIPIYY ASPLAKKCMA VYQTYILSMN
301: DRIRNQFANS NPFVFKHISP LNSIDDFNDV GPSVVMATPG GLQSGLSRQL FDSWCSDKKN ACIIPGYMVE GTLAKTIINE PKEVTLMNGL TAPLNMQVHY
401: ISFSAHADYA QTSTFLKELM PPNIILVHGE ANEMMRLKQK LLTEFPDGNT KIMTPKNCES VEMYFNSEKL AKTIGRLAEK TPDVGDTVSG ILVKKGFTYQ
501: IMAPDELHVF SQLSTATVTQ RITIPFVGAF GVIKHRLEKI FESVEFSTDE ESGLPALKVH ERVTVKQESE KHISLQWSSD PISDMVSDSI VALILNISRE
601: VPKIVMEEED AVKSEEENGK KVEKVIYALL VSLFGDVKLG ENGKLVIRVD GNVAQLDKES GEVESEHSGL KERVRVAFER IQSAVKPIPL SAS

Arabidopsis Description

CPSF73-ICleavage and polyadenylation specificity factor subunit 3-I [Source:UniProtKB/Swiss-Prot;Acc:Q9C952]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.