Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G060590.1 | Barley | cytosol | 41.39 | 95.96 |
| TraesCS5A01G203800.1 | Wheat | cytosol | 99.13 | 82.43 |
| TraesCS5D01G210400.1 | Wheat | cytosol | 97.6 | 81.16 |
| HORVU5Hr1G060570.5 | Barley | cytosol | 93.68 | 76.92 |
| Os09t0397900-01 | Rice | cytosol | 82.35 | 67.62 |
| Zm00001d044213_P001 | Maize | cytosol | 70.59 | 58.06 |
| EES01080 | Sorghum | cytosol | 69.06 | 56.81 |
| KRH70353 | Soybean | cytosol | 61.22 | 52.82 |
| GSMUA_Achr3P07540_001 | Banana | cytosol | 63.62 | 44.31 |
| Solyc04g008030.1.1 | Tomato | cytosol | 62.09 | 43.91 |
| Bra026637.1-P | Field mustard | cytosol | 57.52 | 42.93 |
| CDY09421 | Canola | cytosol | 57.52 | 42.93 |
| CDY66642 | Canola | cytosol | 57.3 | 42.76 |
| AT2G01730.1 | Thale cress | cytoskeleton, cytosol, plasma membrane | 56.86 | 42.58 |
| PGSC0003DMT400075788 | Potato | extracellular | 23.97 | 31.25 |
| TraesCS5B01G537400.1 | Wheat | cytosol | 30.28 | 20.09 |
| TraesCS5B01G536400.1 | Wheat | cytosol | 29.63 | 19.94 |
| TraesCS5B01G360900.1 | Wheat | cytosol | 29.19 | 19.34 |
| TraesCS5B01G462500.2 | Wheat | cytosol | 18.3 | 11.37 |
| VIT_01s0011g05780.t01 | Wine grape | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:16.2.1.2.4 | Gene3D:3.40.50.10890 | Gene3D:3.60.15.10 | InterPro:Beta_Casp | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0010197 |
| GO:GO:0016043 | GO:GO:0030154 | InterPro:IPR036866 | InterPro:Metallo-B-lactamas | PFAM:PF07521 | PFAM:PF10996 |
| PFAM:PF16661 | PANTHER:PTHR11203 | PANTHER:PTHR11203:SF37 | InterPro:RMMBL | InterPro:RibonucZ/Hydroxyglut_hydro | SMART:SM01027 |
| SUPFAM:SSF56281 | EnsemblPlantsGene:TraesCS5B01G202500 | EnsemblPlants:TraesCS5B01G202500.1 | : | : | : |
Description
No Description!
Coordinates
chr5B:-:368662410..368667358
Molecular Weight (calculated)
51423.1 Da
IEP (calculated)
6.507
GRAVY (calculated)
-0.238
Length
459 amino acids
Sequence
(BLAST)
(BLAST)
001: MTYPTKALAP LMLEDYRKVM VDHRGEEEQY SYEDIQNCMK KVIPLDLKQT IQVDRDLVIR AYYAGHVLGA AMIYAKVGDA AMVYTGDYNM TPDRHLGAAQ
101: IDHLKLDLLI TESTYAKTVR DSKHAREREF LKAVHKCVSG GGKVLIPAFA LGRAQELCIL LDDYWERMNL KIPIYFSAGL TIQANMYYKM LIGWTSQKIK
201: DSYTVHNPFD FKHVCDFQRS FINDPGPCVL FATPGMISGG FSLEVFKRWA PSEKNLVTLP GYCVAGTIGH KLMSGKPTRI DLDKETHIDV RCQIHQLSFS
301: PHTDSKGIMD LTEFLSPSHV ILVHGEKPQM SFLKERIESE LGMPCYYPAN NETVSIPTTK NLKISATEKF ITSCSTAQAR DSPQKSNLIC GNHLSGANGD
401: EKLAEGILLM EKSKDAKILC EDELLQLLGA EGHSVQFEPL LRSRIGEAET DIVDNLASE
101: IDHLKLDLLI TESTYAKTVR DSKHAREREF LKAVHKCVSG GGKVLIPAFA LGRAQELCIL LDDYWERMNL KIPIYFSAGL TIQANMYYKM LIGWTSQKIK
201: DSYTVHNPFD FKHVCDFQRS FINDPGPCVL FATPGMISGG FSLEVFKRWA PSEKNLVTLP GYCVAGTIGH KLMSGKPTRI DLDKETHIDV RCQIHQLSFS
301: PHTDSKGIMD LTEFLSPSHV ILVHGEKPQM SFLKERIESE LGMPCYYPAN NETVSIPTTK NLKISATEKF ITSCSTAQAR DSPQKSNLIC GNHLSGANGD
401: EKLAEGILLM EKSKDAKILC EDELLQLLGA EGHSVQFEPL LRSRIGEAET DIVDNLASE
001: MDHVGALPYF TEVCGYNGPI YMSYPTKALS PLMLEDYRRV MVDRRGEEEL FTTTHIANCM KKVIAIDLKQ TIQVDEDLQI RAYYAGHVLG AVMVYAKMGD
101: AAIVYTGDYN MTTDRHLGAA KIDRLQLDLL ISESTYATTI RGSKYPRERE FLQAVHKCVA GGGKALIPSF ALGRAQELCM LLDDYWERMN IKVPIYFSSG
201: LTIQANMYYK MLISWTSQNV KEKHNTHNPF DFKNVKDFDR SLIHAPGPCV LFATPGMLCA GFSLEVFKHW APSPLNLVAL PGYSVAGTVG HKLMAGKPTT
301: VDLYNGTKVD VRCKVHQVAF SPHTDAKGIM DLTKFLSPKN VVLVHGEKPS MMILKEKITS ELDIPCFVPA NGETVSFAST TYIKANASDM FLKSCSNPNF
401: KFSNSTQLRV TDHRTADGVL VIEKSKKAKI VHQDEISEVL HEKNHVVSLA HCCPVKVKGE SEDDDVDLIK QLSAKILKTV SGAQIHESEN CLQVASFKGS
501: LCLKDKCMHR SSSSSSEAVF LCCNWSIADL ELGWEIINAI KLNH
101: AAIVYTGDYN MTTDRHLGAA KIDRLQLDLL ISESTYATTI RGSKYPRERE FLQAVHKCVA GGGKALIPSF ALGRAQELCM LLDDYWERMN IKVPIYFSSG
201: LTIQANMYYK MLISWTSQNV KEKHNTHNPF DFKNVKDFDR SLIHAPGPCV LFATPGMLCA GFSLEVFKHW APSPLNLVAL PGYSVAGTVG HKLMAGKPTT
301: VDLYNGTKVD VRCKVHQVAF SPHTDAKGIM DLTKFLSPKN VVLVHGEKPS MMILKEKITS ELDIPCFVPA NGETVSFAST TYIKANASDM FLKSCSNPNF
401: KFSNSTQLRV TDHRTADGVL VIEKSKKAKI VHQDEISEVL HEKNHVVSLA HCCPVKVKGE SEDDDVDLIK QLSAKILKTV SGAQIHESEN CLQVASFKGS
501: LCLKDKCMHR SSSSSSEAVF LCCNWSIADL ELGWEIINAI KLNH
Arabidopsis Description
CPSF73-IICleavage and polyadenylation specificity factor subunit 3-II [Source:UniProtKB/Swiss-Prot;Acc:Q8GUU3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.