CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH08941
KRH11760
KRH30256
KRH30262
KRH36762
KRH38460

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01730.1	KRH11760	AT1G30460.1	16897494
AT2G01730.1	KRH36762	AT1G30460.1	16897494
AT2G01730.1	KRH08941	AT5G23880.1	16897494
AT2G01730.1	KRH30256	AT5G23880.1	16897494
AT2G01730.1	KRH30262	AT5G23880.1	16897494
AT2G01730.1	KRH38460	AT5G23880.1	16897494
AT2G01730.1	KRH08941	AT5G23880.1	18479511
AT2G01730.1	KRH30256	AT5G23880.1	18479511
AT2G01730.1	KRH30262	AT5G23880.1	18479511
AT2G01730.1	KRH38460	AT5G23880.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G060590.1	Barley	cytosol	30.26	81.31
VIT_01s0011g05780.t01	Wine grape	cytosol	13.91	78.72
EES01080	Sorghum	cytosol	66.54	63.44
Zm00001d044213_P001	Maize	cytosol	66.17	63.08
TraesCS5D01G210400.1	Wheat	cytosol	64.66	62.32
TraesCS5A01G203800.1	Wheat	cytosol	64.66	62.32
Os09t0397900-01	Rice	cytosol	65.23	62.08
HORVU5Hr1G060570.5	Barley	cytosol	64.66	61.54
TraesCS5B01G202500.1	Wheat	cytosol	52.82	61.22
AT2G01730.1	Thale cress	cytoskeleton, cytosol, plasma membrane	66.17	57.42
Bra026637.1-P	Field mustard	cytosol	65.41	56.59
CDY09421	Canola	cytosol	65.41	56.59
CDY66642	Canola	cytosol	65.23	56.42
Solyc04g008030.1.1	Tomato	cytosol	68.61	56.24
GSMUA_Achr3P07540_001	Banana	cytosol	62.41	50.38
PGSC0003DMT400075788	Potato	extracellular	21.8	32.95
KRH44086	Soybean	cytosol	32.14	24.85
KRH26351	Soybean	nucleus	31.95	24.67
KRH30262	Soybean	cytosol	19.36	18.49
KRH08941	Soybean	cytosol, nucleus	20.49	14.77
KRH38460	Soybean	cytosol	20.11	14.48
KRH30256	Soybean	cytosol	16.73	13.17

Protein Annotations

EntrezGene:100814997	MapMan:16.2.1.2.4	Gene3D:3.40.50.10890	Gene3D:3.60.15.10	EMBL:ACUP02000767	InterPro:Beta_Casp
EnsemblPlantsGene:GLYMA_02G085400	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275
GO:GO:0008150	GO:GO:0009987	GO:GO:0010197	GO:GO:0016043	GO:GO:0030154	UniProt:I1JDH7
InterPro:IPR036866	EnsemblPlants:KRH70353	ProteinID:KRH70353	ProteinID:KRH70353.1	InterPro:Metallo-B-lactamas	PFAM:PF07521
PFAM:PF10996	PFAM:PF16661	PANTHER:PTHR11203	PANTHER:PTHR11203:SF37	InterPro:RMMBL	InterPro:RibonucZ/Hydroxyglut_hydro
SMART:SM00849	SMART:SM01027	SUPFAM:SSF56281	UniParc:UPI00023BE03A	:	:

Description

hypothetical protein

Coordinates

chr2:-:7429335..7441818

Molecular Weight (calculated)

60139.8 Da

IEP (calculated)

6.939

GRAVY (calculated)

-0.167

Length

532 amino acids

Sequence
(BLAST)

001: MAIETLVLGA GQEVGKSCVV VTINAKRIMF DCGMHMGYLD HRRYPDFTRI SPSRDLNSAL SCIIITHFHL DHVGALAYFT EVLGYNGPVY MTYPTKALAP
101: LMLEDYRKVM VDRRGEEELF SSDQIAECMK KVIAVDLRQT VQVEKDLQIR AYYAGHVIGA AMFYAKVGDA EMVYTGDYNM TPDRHLGAAQ IDRLRLDLLI
201: TESTYATTIR DSRYAREREF LKAVHKCVSC GGKVLIPTFA LGRAQELCIL LEDYWERMNL KVPIYFSAGL TIQANAYYKM LIRWTRQKIK DTYSKHNAFD
301: FKNVQKFERS MIDAPGPCVL FATPGMLSGG FSVEVFKHWA VSENNLVSLP GYCVPGTIGH KLMSDKHDKV DLDPNTKIDV RCQIHQLAFS PHTDSKGIMD
401: LVNFLSPKHV ILVHGEKHKM ASLKEKIHSE LGIQCYDPAN NETVTIPSAN YVYAETSDTF IRSCLSPNFT FQKCSSVDLC NSTTVDRNLM PELQVEDERV
501: AEGVLVLEKG KKAKIVHQDE LLLMLEEQKH DA

Best Arabidopsis Sequence Match ( AT2G01730.1 )
(BLAST)

001: MAIDCLVLGA GQEIGKSCVV VTINGKKIMF DCGMHMGCDD HNRYPNFSLI SKSGDFDNAI SCIIITHFHM DHVGALPYFT EVCGYNGPIY MSYPTKALSP
101: LMLEDYRRVM VDRRGEEELF TTTHIANCMK KVIAIDLKQT IQVDEDLQIR AYYAGHVLGA VMVYAKMGDA AIVYTGDYNM TTDRHLGAAK IDRLQLDLLI
201: SESTYATTIR GSKYPREREF LQAVHKCVAG GGKALIPSFA LGRAQELCML LDDYWERMNI KVPIYFSSGL TIQANMYYKM LISWTSQNVK EKHNTHNPFD
301: FKNVKDFDRS LIHAPGPCVL FATPGMLCAG FSLEVFKHWA PSPLNLVALP GYSVAGTVGH KLMAGKPTTV DLYNGTKVDV RCKVHQVAFS PHTDAKGIMD
401: LTKFLSPKNV VLVHGEKPSM MILKEKITSE LDIPCFVPAN GETVSFASTT YIKANASDMF LKSCSNPNFK FSNSTQLRVT DHRTADGVLV IEKSKKAKIV
501: HQDEISEVLH EKNHVVSLAH CCPVKVKGES EDDDVDLIKQ LSAKILKTVS GAQIHESENC LQVASFKGSL CLKDKCMHRS SSSSSEAVFL CCNWSIADLE
601: LGWEIINAIK LNH

Arabidopsis Description

CPSF73-IICleavage and polyadenylation specificity factor subunit 3-II [Source:UniProtKB/Swiss-Prot;Acc:Q8GUU3]
SUBAcon: [plasma membrane,cytoskeleton,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.