CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG88461
KRH08941
KRH09220
KRH11760
KRH30256
KRH30262
KRH36762
KRH38460
KRH38714
KRH54731
KRH63183
KRH65727
KRH70353
KRH75969

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23880.1	KRH11760	AT1G30460.1	16897494
AT5G23880.1	KRH36762	AT1G30460.1	16897494
AT5G23880.1	KRH11760	AT1G30460.1	18479511
AT5G23880.1	KRH36762	AT1G30460.1	18479511
AT5G23880.1	KRH70353	AT2G01730.1	16897494
AT5G23880.1	KRH70353	AT2G01730.1	18479511
AT5G23880.1	KRG88461	AT5G01400.1	17008405
AT5G23880.1	KRH65727	AT5G01400.1	17008405
AT5G23880.1	KRH75969	AT5G01400.1	17008405
AT5G23880.1	KRH08941	AT5G23880.1	16897494
AT5G23880.1	KRH30256	AT5G23880.1	16897494
AT5G23880.1	KRH30262	AT5G23880.1	16897494
AT5G23880.1	KRH38460	AT5G23880.1	16897494
AT5G23880.1	KRH09220	AT5G51660.1	16897494
AT5G23880.1	KRH38714	AT5G51660.1	16897494
AT5G23880.1	KRH09220	AT5G51660.1	17008405
AT5G23880.1	KRH38714	AT5G51660.1	17008405
AT5G23880.1	KRH09220	AT5G51660.1	18479511
AT5G23880.1	KRH38714	AT5G51660.1	18479511
AT5G23880.1	KRH54731	AT5G60940.1	18479511
AT5G23880.1	KRH63183	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38460	Soybean	cytosol	96.75	88.5
KRH08941	Soybean	cytosol, nucleus	94.38	86.45
VIT_16s0050g00590.t01	Wine grape	cytosol	80.62	73.65
KRH30262	Soybean	cytosol	59.17	71.81
AT5G23880.1	Thale cress	cytosol	76.48	69.96
Solyc03g025540.2.1	Tomato	nucleus	76.33	69.82
GSMUA_Achr1P15280_001	Banana	cytosol	75.0	68.98
CDX80392	Canola	cytosol	74.7	68.34
Bra009712.1-P	Field mustard	cytosol	74.56	68.2
CDX88053	Canola	cytosol	74.26	67.93
Os09t0569400-01	Rice	cytosol	72.63	66.53
EER93127	Sorghum	cytosol	71.15	65.18
TraesCS5D01G464200.1	Wheat	cytosol	70.12	64.23
TraesCS5B01G462500.2	Wheat	cytosol	69.97	64.01
TraesCS5A01G453700.5	Wheat	cytosol	69.67	63.73
Zm00001d044552_P006	Maize	cytosol, plasma membrane	70.27	62.01
HORVU5Hr1G109220.1	Barley	plastid	70.41	60.41
KRH70353	Soybean	cytosol	13.17	16.73
KRH44086	Soybean	cytosol	16.57	16.28
KRH26351	Soybean	nucleus	16.42	16.11

Protein Annotations

MapMan:16.2.1.2.2	Gene3D:3.40.50.10890	Gene3D:3.60.15.10	UniProt:A0A0R0HIC1	EMBL:ACUP02006942	InterPro:Beta_Casp
InterPro:CPSF2	InterPro:CPSF2_MBL	ncoils:Coil	InterPro:Cpsf2_C	EnsemblPlantsGene:GLYMA_11G170700	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005847	GO:GO:0006139	GO:GO:0006378	GO:GO:0006379
GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR036866	EnsemblPlants:KRH30256
ProteinID:KRH30256	ProteinID:KRH30256.1	InterPro:Metallo-B-lactamas	PFAM:PF07521	PFAM:PF10996	PFAM:PF13299
PFAM:PF16661	PANTHER:PTHR11203	PANTHER:PTHR11203:SF5	InterPro:RMMBL	InterPro:RibonucZ/Hydroxyglut_hydro	SMART:SM01027
SUPFAM:SSF56281	UniParc:UPI0006ED4A9D	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:18313678..18328202

Molecular Weight (calculated)

74347.9 Da

IEP (calculated)

5.381

GRAVY (calculated)

-0.106

Length

676 amino acids

Sequence
(BLAST)

001: MGTSVRVTPL CGVYNENPLS YLVSIDGFNF LVDCGWNDHF DPSHLQPLAR VASTIDAVLL SHADTLHLGA LPYAMKRLGL SSPHFGKGEG IVIAPHVAGH
101: LLGGTIWKIT KDGEDVIYAV DFNHRKERHL NGTVLGSFVR PAVLITDAYN ALNNQPYRRQ NDKEFGDILK KTLRAGGNVL LPVDTVGRVL ELILMLELYW
201: ADENLNCPIY FLTYVASSTI DYVKSFLEWM SDTIAKSFEK THCYACTCWY VTLLINKTEL DNAPDGPKVV LASMASLEAG FSHDIFVEWA NDVKNLVLFT
301: ERGQFATLAR MLQADPPPKA VKVVVSKCVP LVGEELIAYE EEQNRIKKEA LKASLMKEEE LKTSHGADND TSDPMVIDSG NNHVPPEVTG PRGGGYRDIF
401: VDGFVPPSTS VAPIFPCYEN TSEWDDFGET WTSDQTAMHG GSDIKGKLDE GAASLILDTK PSKVVSDERT VQVRCSLVYM NSEGRSDGRS IKNILSHVAP
501: LKLVLVHGSA EATEHLKQHC LKHVCPHVYA PQIEETIDVT SDLCAYKVQL SEKLMSNVLF KKLGDYEIAW VDAVVGKTEN DPLSLLPVSG AAPPHKSVLV
601: GDLKLADIKQ FLSSMGVQVE FAGGALRCGE YVTLRKVGDA SQKGGGSGAQ QIVIEGPLCE DYYKIRDYLY SQFYLL

Best Arabidopsis Sequence Match ( AT5G23880.1 )
(BLAST)

001: MGTSVQVTPL CGVYNENPLS YLVSIDGFNF LIDCGWNDLF DTSLLEPLSR VASTIDAVLL SHPDTLHIGA LPYAMKQLGL SAPVYATEPV HRLGLLTMYD
101: QFLSRKQVSD FDLFTLDDID SAFQNVIRLT YSQNYHLSGK GEGIVIAPHV AGHMLGGSIW RITKDGEDVI YAVDYNHRKE RHLNGTVLQS FVRPAVLITD
201: AYHALYTNQT ARQQRDKEFL DTISKHLEVG GNVLLPVDTA GRVLELLLIL EQHWSQRGFS FPIYFLTYVS SSTIDYVKSF LEWMSDSISK SFETSRDNAF
301: LLRHVTLLIN KTDLDNAPPG PKVVLASMAS LEAGFAREIF VEWANDPRNL VLFTETGQFG TLARMLQSAP PPKFVKVTMS KRVPLAGEEL IAYEEEQNRL
401: KREEALRASL VKEEETKASH GSDDNSSEPM IIDTKTTHDV IGSHGPAYKD ILIDGFVPPS SSVAPMFPYY DNTSEWDDFG EIINPDDYVI KDEDMDRGAM
501: HNGGDVDGRL DEATASLMLD TRPSKVMSNE LIVTVSCSLV KMDYEGRSDG RSIKSMIAHV SPLKLVLVHA IAEATEHLKQ HCLNNICPHV YAPQIEETVD
601: VTSDLCAYKV QLSEKLMSNV IFKKLGDSEV AWVDSEVGKT ERDMRSLLPM PGAASPHKPV LVGDLKIADF KQFLSSKGVQ VEFAGGGALR CGEYVTLRKV
701: GPTGQKGGAS GPQQILIEGP LCEDYYKIRD YLYSQFYLL

Arabidopsis Description

CPSF100Cleavage and polyadenylation specificity factor subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKF9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.