Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH09220 | Soybean | nucleus | 96.89 | 97.03 |
| VIT_16s0022g01860.t01 | Wine grape | cytosol, nucleus, plastid | 76.95 | 79.13 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 32.64 | 77.67 |
| Zm00001d004153_P002 | Maize | nucleus | 13.73 | 77.43 |
| AT5G51660.1 | Thale cress | cytosol | 73.5 | 73.86 |
| Solyc03g007100.2.1 | Tomato | nucleus | 71.5 | 72.7 |
| Bra022557.1-P | Field mustard | cytosol | 72.53 | 72.58 |
| CDY46934 | Canola | cytosol | 72.53 | 72.58 |
| CDX91600 | Canola | cytosol | 72.05 | 72.1 |
| GSMUA_Achr11P... | Banana | cytosol, plasma membrane, plastid | 25.26 | 68.28 |
| HORVU2Hr1G011580.28 | Barley | nucleus | 66.11 | 67.13 |
| TraesCS2B01G074500.1 | Wheat | cytosol | 65.77 | 67.02 |
| TraesCS2D01G060100.3 | Wheat | cytosol, nucleus, plastid | 65.98 | 66.76 |
| KXG25932 | Sorghum | cytosol | 66.11 | 66.53 |
| TraesCS2A01G061100.3 | Wheat | nucleus | 65.91 | 66.46 |
| GSMUA_Achr11P... | Banana | cytosol | 9.8 | 63.11 |
| Zm00001d004154_P002 | Maize | plasma membrane | 50.72 | 60.49 |
| Os04t0252200-01 | Rice | cytosol, nucleus, plasma membrane | 9.32 | 56.02 |
| KRH04684 | Soybean | extracellular | 3.73 | 51.43 |
Protein Annotations
| EntrezGene:100801803 | MapMan:16.2.1.2.1 | Gene3D:2.130.10.10 | EMBL:ACUP02005866 | InterPro:Cleavage/polyA-sp_fac_asu_C | ncoils:Coil |
| EnsemblPlantsGene:GLYMA_09G153100 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006378 | GO:GO:0006379 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016853 | GO:GO:0048046 | UniProt:I1L3K1 | InterPro:IPR015943 | EnsemblPlants:KRH38714 |
| ProteinID:KRH38714 | ProteinID:KRH38714.1 | PFAM:PF03178 | PFAM:PF10433 | PANTHER:PTHR10644 | PANTHER:PTHR10644:SF2 |
| UniParc:UPI00023388DA | InterPro:WD40/YVTN_repeat-like_dom_sf | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr9:-:37563283..37585031
Molecular Weight (calculated)
158858.0 Da
IEP (calculated)
6.055
GRAVY (calculated)
-0.096
Length
1449 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSFAAYKMMQ CPTGIDNCAA GFLTHSRSDF VPLQPDDLDA AEWPSRPRHH VGPLPNLVVT AANVLEVYAV RLQEDQQPKD ASDDSRRGTL LDGIAGASLE
0101: LECHYRLHGN VETMAVLSIG GGDVSRKRDS IILTFADAKI SVLEYDDSIH GLRTSSLHCF EGPEWLHLKR GREQFARGPV VKIDPQGRCG GVLIYDLQMI
0201: ILKATQVGSG LVGDDDAFGS SGAVAARIES SYMINLRDLD MRHVKDFTFV YGYIEPVMVI LHERELTWAG RVSWTHHTCM ISALSISTTL KQHPLIWSAV
0301: NLPHDAYKLL AVPSPIGGVL VIGANTIHYH SQSASCALAL NNYAVTLDSS QEIPRSSFNV ELDAANATWL LSDVALLSTK TGELLLLMLV YDGRVVQRLD
0401: LSKSKASVLS SGITTIGNSL FFLASRLGDS MLVQFSCGSG VSMMSSNLKE EVGDIEVDAP SKRLRRSPSD ALQDMVSGEE LSLYGSATNR TESAQKSFSF
0501: AVRDSLINVG PLKDFSYGLR INADANATGI AKQSNYELVC CSGHGKNGSL CVLRQSIRPE VITEVELPGC KGIWTVYHKS TRSHNADSSK MADDDDEYHA
0601: YLIISLEART MVLETADLLS EVTESVDYYV QGKTLAAGNL FGRRRVIQVY ERGARILDGS FMTQDVSFGA SNSESGSASE SAIALSVSIA DPFVLLRMSD
0701: GSIRLLIGDP STCTISVTSP ASFESSKGSV SSCTLYHDKG PEPWLRKTST DAWLSTGVGE AIDGTDGAAQ DHGDIYCVVC FDNGNLEIFD IPNFNCVFSV
0801: ENFMSGKSHL VDALMKEVLK DSKQGDRDGV VNQGRKDNIP NMKVVELAMQ RWSGQHSRPF LFGILSDGTI LCYHAYLYES PDGTSKVEDS ASAGGSIGLS
0901: STNVSRLRNL RFVRVPLDAY PREDTSNGSP CQQITIFKNI GSYQGFFLSG SRPAWVMVLR ERLRVHPQLC DGSIVAFTVL HNVNCNHGLI YVTSQGVLKI
1001: CQLPSGSNYD SYWPVQKIPL KATPHQVTYF AEKNLYPLIV SFPVLKPLNQ VISLVDQDFN HQNESQNMNP DEQNRFYPID EFEVRIMEPE KSGGPWQTKA
1101: TIPMQSSENA LTVRMVTLLN TTSKENETLL AIGTAYVQGE DVAARGRILL FSLGKITDNP QTLVSEVYSK ELKGAISALA SLQGHLLIAS GPKIILHKWN
1201: GTELNGIAFF DAPPLHVVSL NIVKNFILIG DIHKSIYFLS WKEQGAQLSL LAKDFGSLDC FATEFLIDGS TLSLMVSDDN RNIQIFYYAP KMSESWKGQK
1301: LLSRAEFHVG AHVTKFLRLQ MLSTSDRAGS VPGSDKTNRF ALLFGTLDGS IGCIAPLDEI TFRRLQSLQR KLVDAVPHVA GLNPRAFRLF RSNGKAHRPG
1401: PDSIVDCELL CHYEMLPLEE QLEIANQIGT TRSQILSNLS DLSLGTSFL
0101: LECHYRLHGN VETMAVLSIG GGDVSRKRDS IILTFADAKI SVLEYDDSIH GLRTSSLHCF EGPEWLHLKR GREQFARGPV VKIDPQGRCG GVLIYDLQMI
0201: ILKATQVGSG LVGDDDAFGS SGAVAARIES SYMINLRDLD MRHVKDFTFV YGYIEPVMVI LHERELTWAG RVSWTHHTCM ISALSISTTL KQHPLIWSAV
0301: NLPHDAYKLL AVPSPIGGVL VIGANTIHYH SQSASCALAL NNYAVTLDSS QEIPRSSFNV ELDAANATWL LSDVALLSTK TGELLLLMLV YDGRVVQRLD
0401: LSKSKASVLS SGITTIGNSL FFLASRLGDS MLVQFSCGSG VSMMSSNLKE EVGDIEVDAP SKRLRRSPSD ALQDMVSGEE LSLYGSATNR TESAQKSFSF
0501: AVRDSLINVG PLKDFSYGLR INADANATGI AKQSNYELVC CSGHGKNGSL CVLRQSIRPE VITEVELPGC KGIWTVYHKS TRSHNADSSK MADDDDEYHA
0601: YLIISLEART MVLETADLLS EVTESVDYYV QGKTLAAGNL FGRRRVIQVY ERGARILDGS FMTQDVSFGA SNSESGSASE SAIALSVSIA DPFVLLRMSD
0701: GSIRLLIGDP STCTISVTSP ASFESSKGSV SSCTLYHDKG PEPWLRKTST DAWLSTGVGE AIDGTDGAAQ DHGDIYCVVC FDNGNLEIFD IPNFNCVFSV
0801: ENFMSGKSHL VDALMKEVLK DSKQGDRDGV VNQGRKDNIP NMKVVELAMQ RWSGQHSRPF LFGILSDGTI LCYHAYLYES PDGTSKVEDS ASAGGSIGLS
0901: STNVSRLRNL RFVRVPLDAY PREDTSNGSP CQQITIFKNI GSYQGFFLSG SRPAWVMVLR ERLRVHPQLC DGSIVAFTVL HNVNCNHGLI YVTSQGVLKI
1001: CQLPSGSNYD SYWPVQKIPL KATPHQVTYF AEKNLYPLIV SFPVLKPLNQ VISLVDQDFN HQNESQNMNP DEQNRFYPID EFEVRIMEPE KSGGPWQTKA
1101: TIPMQSSENA LTVRMVTLLN TTSKENETLL AIGTAYVQGE DVAARGRILL FSLGKITDNP QTLVSEVYSK ELKGAISALA SLQGHLLIAS GPKIILHKWN
1201: GTELNGIAFF DAPPLHVVSL NIVKNFILIG DIHKSIYFLS WKEQGAQLSL LAKDFGSLDC FATEFLIDGS TLSLMVSDDN RNIQIFYYAP KMSESWKGQK
1301: LLSRAEFHVG AHVTKFLRLQ MLSTSDRAGS VPGSDKTNRF ALLFGTLDGS IGCIAPLDEI TFRRLQSLQR KLVDAVPHVA GLNPRAFRLF RSNGKAHRPG
1401: PDSIVDCELL CHYEMLPLEE QLEIANQIGT TRSQILSNLS DLSLGTSFL
0001: MSFAAYKMMH WPTGVENCAS GYITHSLSDS TLQIPIVSVH DDIEAEWPNP KRGIGPLPNV VITAANILEV YIVRAQEEGN TQELRNPKLA KRGGVMDGVY
0101: GVSLELVCHY RLHGNVESIA VLPMGGGNSS KGRDSIILTF RDAKISVLEF DDSIHSLRMT SMHCFEGPDW LHLKRGRESF PRGPLVKVDP QGRCGGVLVY
0201: GLQMIILKTS QVGSGLVGDD DAFSSGGTVS ARVESSYIIN LRDLEMKHVK DFVFLHGYIE PVIVILQEEE HTWAGRVSWK HHTCVLSALS INSTLKQHPV
0301: IWSAINLPHD AYKLLAVPSP IGGVLVLCAN TIHYHSQSAS CALALNNYAS SADSSQELPA SNFSVELDAA HGTWISNDVA LLSTKSGELL LLTLIYDGRA
0401: VQRLDLSKSK ASVLASDITS VGNSLFFLGS RLGDSLLVQF SCRSGPAASL PGLRDEDEDI EGEGHQAKRL RMTSDTFQDT IGNEELSLFG STPNNSDSAQ
0501: KSFSFAVRDS LVNVGPVKDF AYGLRINADA NATGVSKQSN YELVCCSGHG KNGALCVLRQ SIRPEMITEV ELPGCKGIWT VYHKSSRGHN ADSSKMAADE
0601: DEYHAYLIIS LEARTMVLET ADLLTEVTES VDYYVQGRTI AAGNLFGRRR VIQVFEHGAR ILDGSFMNQE LSFGASNSES NSGSESSTVS SVSIADPYVL
0701: LRMTDDSIRL LVGDPSTCTV SISSPSVLEG SKRKISACTL YHDKGPEPWL RKASTDAWLS SGVGEAVDSV DGGPQDQGDI YCVVCYESGA LEIFDVPSFN
0801: CVFSVDKFAS GRRHLSDMPI HELEYELNKN SEDNTSSKEI KNTRVVELAM QRWSGHHTRP FLFAVLADGT ILCYHAYLFD GVDSTKAENS LSSENPAALN
0901: SSGSSKLRNL KFLRIPLDTS TREGTSDGVA SQRITMFKNI SGHQGFFLSG SRPGWCMLFR ERLRFHSQLC DGSIAAFTVL HNVNCNHGFI YVTAQGVLKI
1001: CQLPSASIYD NYWPVQKIPL KATPHQVTYY AEKNLYPLIV SYPVSKPLNQ VLSSLVDQEA GQQLDNHNMS SDDLQRTYTV EEFEIQILEP ERSGGPWETK
1101: AKIPMQTSEH ALTVRVVTLL NASTGENETL LAVGTAYVQG EDVAARGRVL LFSFGKNGDN SQNVVTEVYS RELKGAISAV ASIQGHLLIS SGPKIILHKW
1201: NGTELNGVAF FDAPPLYVVS MNVVKSFILL GDVHKSIYFL SWKEQGSQLS LLAKDFESLD CFATEFLIDG STLSLAVSDE QKNIQVFYYA PKMIESWKGL
1301: KLLSRAEFHV GAHVSKFLRL QMVSSGADKI NRFALLFGTL DGSFGCIAPL DEVTFRRLQS LQKKLVDAVP HVAGLNPLAF RQFRSSGKAR RSGPDSIVDC
1401: ELLCHYEMLP LEEQLELAHQ IGTTRYSILK DLVDLSVGTS FL
0101: GVSLELVCHY RLHGNVESIA VLPMGGGNSS KGRDSIILTF RDAKISVLEF DDSIHSLRMT SMHCFEGPDW LHLKRGRESF PRGPLVKVDP QGRCGGVLVY
0201: GLQMIILKTS QVGSGLVGDD DAFSSGGTVS ARVESSYIIN LRDLEMKHVK DFVFLHGYIE PVIVILQEEE HTWAGRVSWK HHTCVLSALS INSTLKQHPV
0301: IWSAINLPHD AYKLLAVPSP IGGVLVLCAN TIHYHSQSAS CALALNNYAS SADSSQELPA SNFSVELDAA HGTWISNDVA LLSTKSGELL LLTLIYDGRA
0401: VQRLDLSKSK ASVLASDITS VGNSLFFLGS RLGDSLLVQF SCRSGPAASL PGLRDEDEDI EGEGHQAKRL RMTSDTFQDT IGNEELSLFG STPNNSDSAQ
0501: KSFSFAVRDS LVNVGPVKDF AYGLRINADA NATGVSKQSN YELVCCSGHG KNGALCVLRQ SIRPEMITEV ELPGCKGIWT VYHKSSRGHN ADSSKMAADE
0601: DEYHAYLIIS LEARTMVLET ADLLTEVTES VDYYVQGRTI AAGNLFGRRR VIQVFEHGAR ILDGSFMNQE LSFGASNSES NSGSESSTVS SVSIADPYVL
0701: LRMTDDSIRL LVGDPSTCTV SISSPSVLEG SKRKISACTL YHDKGPEPWL RKASTDAWLS SGVGEAVDSV DGGPQDQGDI YCVVCYESGA LEIFDVPSFN
0801: CVFSVDKFAS GRRHLSDMPI HELEYELNKN SEDNTSSKEI KNTRVVELAM QRWSGHHTRP FLFAVLADGT ILCYHAYLFD GVDSTKAENS LSSENPAALN
0901: SSGSSKLRNL KFLRIPLDTS TREGTSDGVA SQRITMFKNI SGHQGFFLSG SRPGWCMLFR ERLRFHSQLC DGSIAAFTVL HNVNCNHGFI YVTAQGVLKI
1001: CQLPSASIYD NYWPVQKIPL KATPHQVTYY AEKNLYPLIV SYPVSKPLNQ VLSSLVDQEA GQQLDNHNMS SDDLQRTYTV EEFEIQILEP ERSGGPWETK
1101: AKIPMQTSEH ALTVRVVTLL NASTGENETL LAVGTAYVQG EDVAARGRVL LFSFGKNGDN SQNVVTEVYS RELKGAISAV ASIQGHLLIS SGPKIILHKW
1201: NGTELNGVAF FDAPPLYVVS MNVVKSFILL GDVHKSIYFL SWKEQGSQLS LLAKDFESLD CFATEFLIDG STLSLAVSDE QKNIQVFYYA PKMIESWKGL
1301: KLLSRAEFHV GAHVSKFLRL QMVSSGADKI NRFALLFGTL DGSFGCIAPL DEVTFRRLQS LQKKLVDAVP HVAGLNPLAF RQFRSSGKAR RSGPDSIVDC
1401: ELLCHYEMLP LEEQLELAHQ IGTTRYSILK DLVDLSVGTS FL
Arabidopsis Description
CPSF160Cleavage and polyadenylation specificity factor subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGR0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.